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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcctttttgtattgtcgctgatacatatttacattgccgttatctaggctaacaaacaaattctggctactgcttaccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAGACGACGCTGATTGCTCTCCAGGACATCTCGCTCGAGAAGATCCTTGATG

Basic information

species Oryza sativa
transcript LOC_Os03g43930.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g43930.1 (Oryza sativa), 3'ss of exon 16
lower sequence: GRMZM2G423337_T01 (Zea mays), 3'ss of exon 9
-----gtgcgcctttttgtattgt--cgctgatacata--tttacattgccgttatctaggctaacaaacaaattctggctactgcttaccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAGACGACGCTGATTGCTCTCCAGGACATCTCGCTCGAGAAGATCCTTGATG
      ||  | || | |  ||||  |||   | | ||  ||  |||||  ||  ||| ||||       || || ||   |    | |  |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
gtaacttggtcgttctcgctttgtttcgccagttcgtagcttggcattgtggt-gtct-ggctggtgttgaagttttgtggaaccgtga--attcagGCTGCTCCCGTGTTCACCTTTGCCAACCAAGCCGGCCTGGACATGCTGGAGACGACGCTGATTGCGCTCCAGGACATCTCCCTTGAGAAGATCCTTGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88838773|gb|CI376311.1|CI376311
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87014872|gb|CI271471.1|CI271471
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88236401|gb|CI235603.1|CI235603
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|25802926|gb|CA758887.1|CA758887
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCTGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88235827|gb|CI235029.1|CI235029
EST:     GGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: GGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87036584|gb|CI191206.1|CI191206
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87016506|gb|CI273716.1|CI273716
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87036221|gb|CI190843.1|CI190843
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88235904|gb|CI235106.1|CI235106
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86436847|gb|CI118569.1|CI118569
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86487572|gb|CI130205.1|CI130205
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGG-C----T-                         G-T--TCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87039801|gb|CI194423.1|CI194423
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88233296|gb|CI233145.1|CI233145
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88983063|gb|CI020627.1|CI020627
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88236116|gb|CI235318.1|CI235318
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88236264|gb|CI235466.1|CI235466
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88837847|gb|CI371425.1|CI371425
EST:     CAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: CAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88235826|gb|CI235028.1|CI235028
EST:     GCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: GCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86486713|gb|CI129346.1|CI129346
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87027472|gb|CI272237.1|CI272237
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88248987|gb|CI248836.1|CI248836
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87039979|gb|CI194601.1|CI194601
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87034732|gb|CI189356.1|CI189356
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTCCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86499474|gb|CI142107.1|CI142107
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86480098|gb|CI122731.1|CI122731
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86827312|gb|CI270963.1|CI270963
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87041845|gb|CI196467.1|CI196467
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86478938|gb|CI121571.1|CI121571
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88984269|gb|CI020184.1|CI020184
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88197420|gb|CI196727.1|CI196727
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87036373|gb|CI190995.1|CI190995
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87038610|gb|CI192649.1|CI192649
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88198258|gb|CI198108.1|CI198108
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87013876|gb|CI271267.1|CI271267
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87040785|gb|CI195407.1|CI195407
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88197905|gb|CI197755.1|CI197755
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87039024|gb|CI193646.1|CI193646
EST:     TGTGGCAACACTCTGATTCAATCATGAGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88234749|gb|CI234598.1|CI234598
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86481983|gb|CI124616.1|CI124616
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87036851|gb|CI191473.1|CI191473
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCACCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87033348|gb|CI187972.1|CI187972
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87040859|gb|CI195481.1|CI195481
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86437481|gb|CI119203.1|CI119203
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87040080|gb|CI193289.1|CI193289
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88233458|gb|CI233307.1|CI233307
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87040822|gb|CI195444.1|CI195444
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88235694|gb|CI234896.1|CI234896
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88829447|gb|CI074317.1|CI074317
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87037761|gb|CI192383.1|CI192383
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86855875|gb|CI271094.1|CI271094
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87022878|gb|CI269814.1|CI269814
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87039677|gb|CI194299.1|CI194299
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86482094|gb|CI124727.1|CI124727
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88235250|gb|CI236452.1|CI236452
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88234404|gb|CI234253.1|CI234253
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88236633|gb|CI235835.1|CI235835
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88236276|gb|CI235478.1|CI235478
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87037625|gb|CI192247.1|CI192247
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88957022|gb|CI095071.1|CI095071
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87037463|gb|CI192085.1|CI192085
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88247554|gb|CI247403.1|CI247403
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88197640|gb|CI197490.1|CI197490
EST:     TGTGGCAACACTCTGATTCAATCATGTGCTGCACCCTG-A----A----G                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 19 (upstream exon), 57 (downstream exon)
Score: 1

GGATCTCCTTCGCACAGACTCACAAAGCACGGATTCTTCCTTGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTGgtgcgccttt ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAGACGACGCTGATTGCTCTCCAGGACATCTCGCTCGAGAAGATCCTTGATG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacattgccgttatctaggctaacaaacaaattctggctactgcttaccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAGACGACGCTGATTGCTCTCCAGGACATCTCGCTCGAGAAGATCCTTGATG
                                         tgcttac  putative branch site (score: 1)
                        aaacaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgcctttttgtattgtcgctgatacatatttacattgccgttatctaggctaacaaacaaattctggctactgcttaccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAGACGACGCTGATTGCTCTCCAGGACATCTCGCTCGAGAAGATCCTTGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT