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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaccttttcatgaattactataataagatggacatgttgagatgttctataacatttacttgaaatctgaattttgataatgggggttttcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG

Basic information

species Oryza sativa
transcript LOC_Os03g24460.3
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g24460.3 (Oryza sativa), 3'ss of exon 16
lower sequence: GRMZM2G108416_T01 (Zea mays), 3'ss of exon 17
-ctaccttttcatgaattactataataagatggacatgttgagatgttctataacatt-tacttgaaatctgaattttgataatgggggttttcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
   |  | | |||||| | || |  | | ||  |  ||   | | |  | |||      ||     ||| |  ||| | | ||    | ||||||| ||||||||||||| || ||||| ||||||||||||||||||
cagaattatgcatgaactgcttt--tgatattaatctgaccacacgcaccataggtccataacatgaatgtttattcttacaactctgattttcacgtgcagGTATGGACAACCGGAACAATGGGTGAAATCACACCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89187323|gb|CI047390.1|CI047390
EST:     TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG                         GTATGGACTACTGGAACGATGGGTGAAATCACACCG
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: gi|88278817|gb|CI397621.1|CI397621
EST:     CGCATTAGTTAATCAGAATTTCATGCTGCAGACGAG                         GTATGGACTACTGGAACGATGGGTGAAATCACACCG
genomic: CGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: gi|88542896|gb|CI472254.1|CI472254
EST:     CTGCAGACGAG                         GTATGGACTACTGGAACGATGGGTGAAATCACACCG
genomic: CTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: gi|86869013|gb|CI335580.1|CI335580
EST:     TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG                         GTATGGACTACTGGAACGATGGGTGAAATCACACCG
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: gi|88828489|gb|CI073359.1|CI073359
EST:     TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG                         GTATGGACTACTGGAACGATGGGTGGAATCACACCG
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: gi|88957211|gb|CI095197.1|CI095197
EST:     TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG                         GTATGGACTACTGGAACGATGGGTGAAATCACACCG
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: gi|88263285|gb|CI367059.1|CI367059
EST:     TGTTACAT-AACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG                         GTATGGACTACTGGAACGATGGGTGAAATCACACCG
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: gi|88437450|gb|CI528809.1|CI528809
EST:     TTTCATGCTGCAGACGAG                         GTATGGACTACTGGAACGATGGGTGAAATCACACCG
genomic: TTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: gi|88958377|gb|CI095895.1|CI095895
EST:     TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG                         GTATGGACTACTGGAACGATGGGTGAAATCACACCG
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: gi|88525458|gb|CI453913.1|CI453913
EST:     ATTTCATGCTGCAGACGAG                         GTATGGACTACTGGAACGATGGGTGAAATCACACCG
genomic: ATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: gi|88531544|gb|CI460026.1|CI460026
EST:     CATGCTGCAGACGAG                         GTATGGACTACTGGAACGATGGGTGAAATCACACCG
genomic: CATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: gi|86433061|gb|CI093404.1|CI093404
EST:     TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG                         GTATGGACTACTGGAACGATGGGTGAAATCACACCG
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: gi|86426440|gb|CI071537.1|CI071537
EST:     TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG                         GTATGGACTACTGGAACGATGGGTGAAATCACACCG
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: gi|88541495|gb|CI470767.1|CI470767
EST:     TGCTGCAGACGAG                         GTATGGACTACTGGAACGATGGGTGAAATCACACCG
genomic: TGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: gi|88278792|gb|CI397596.1|CI397596
EST:     CGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG                         GTATGGACTACTGGAACGATGGGTGAAATCACACCG
genomic: CGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: gi|88548475|gb|CI476851.1|CI476851
EST:     TTTCATGCTGCAGACGAG                         GTATGGACTACTGGAACGATGGGTGAAATCACACCG
genomic: TTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: gi|88964563|gb|CI069911.1|CI069911
EST:     TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG                         GTATGGACTACTGGAACGATGGGTGAAATCACACCG
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctataacatttacttgaaatctgaattttgataatgggggttttcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
                                          ttttcacct  CT-rich tract
                       tgaattttgataat  TA-rich tract