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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttccagccaaaacttgattctgaatttgtcctgttgttgtttcaatgtgtttcttatattctatcagagccctaatgtttctctctctcttttttttttttggtttcgtttgcactgacatgatcaccatttaccagGGAAACTGGAG

Basic information

species Oryza sativa
transcript LOC_Os03g24220.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58596217|gb|CK006745.1|CK006745
EST:     ACATGATGTTGTTAGAGAGCCTCACTTGTATACATTCTCATTGAGGAATG                         GGAAACTGGAG
genomic: ACATGATGTTGTTAGAGAGCCTCACTTGTATACATTCTCATTGAGGAATGgttagttcca ... catttaccagGGAAACTGGAG
EST: gi|88351837|gb|CI624642.1|CI624642
EST:     ACATGATGTTGTTAGAGACCCTCACTTGTATACATTCTCATTGAGGAATG                         GGAAACTGGAG
genomic: ACATGATGTTGTTAGAGAGCCTCACTTGTATACATTCTCATTGAGGAATGgttagttcca ... catttaccagGGAAACTGGAG
EST: gi|25798468|gb|CA754429.1|CA754429
EST:     ACATGATGTTGTTAGAGAGCCTCACTTGTATACATTCTCATTGAGGAATG                         GGAAACTGGAG
genomic: ACATGATGTTGTTAGAGAGCCTCACTTGTATACATTCTCATTGAGGAATGgttagttcca ... catttaccagGGAAACTGGAG
EST: gi|396941448|gb|HO188657.1|HO188657
EST:     ACATGATGTTGTTAGAGAGCCTCACTTGTATACATTCTCATTGAGGAATG                         GGAAACTGGAG
genomic: ACATGATGTTGTTAGAGAGCCTCACTTGTATACATTCTCATTGAGGAATGgttagttcca ... catttaccagGGAAACTGGAG
EST: gi|88722817|gb|CI746327.1|CI746327
EST:     ACATGATGTTGTTAGAGAGCCTCACTTGTATACATTCTCATTGAGGAATG                         GGAAACTGGAG
genomic: ACATGATGTTGTTAGAGAGCCTCACTTGTATACATTCTCATTGAGGAATGgttagttcca ... catttaccagGGAAACTGGAG
EST: gi|12404685|gb|AU166286.1|AU166286
EST:     ACATGATGTTGTTAGAGAGCCTCACTTGTATACATTCTCATTGAGGAATG                         GGAAACTGGAGGTCACTGAA
genomic: ACATGATGTTGTTAGAGAGCCTCACTTGTATACATTCTCATTGAGGAATGgttagttcca ... catttaccagGGAAACTGGAGGTCACTGAA
EST: gi|33674859|gb|CF303098.1|CF303098
EST:     ACATGATGTTGTTAGAGAGCCTCACTTGTATACATTCTCATTGAGGAATG                         GGAAACTGGAG
genomic: ACATGATGTTGTTAGAGAGCCTCACTTGTATACATTCTCATTGAGGAATGgttagttcca ... catttaccagGGAAACTGGAG
EST: gi|58674368|gb|CK063054.1|CK063054
EST:     ACATGATGTTGTTAGAGAGCCTCACTTGTATACATTCTCATTGAGGAATG                         GGAAACTGGAG
genomic: ACATGATGTTGTTAGAGAGCCTCACTTGTATACATTCTCATTGAGGAATGgttagttcca ... catttaccagGGAAACTGGAG
EST: gi|58610643|gb|CK038355.1|CK038355
EST:     ACATGATGTTGTTAGAGAGCCTCACTTGTATACATTCTCATTGAGGAATG                         GGAAACTGGAG
genomic: ACATGATGTTGTTAGAGAGCCTCACTTGTATACATTCTCATTGAGGAATGgttagttcca ... catttaccagGGAAACTGGAG
EST: gi|58672994|gb|CK061680.1|CK061680
EST:     ACATGATGTTGTTAGAGAGCCTCACTTGTATACATTCTCATTGAGGAATG                         GGAAACTGGAG
genomic: ACATGATGTTGTTAGAGAGCCTCACTTGTATACATTCTCATTGAGGAATGgttagttcca ... catttaccagGGAAACTGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctctcttttttttttttggtttcgtttgcactgacatgatcaccatttaccagGGAAACTGGAG
                              cactgac  putative branch site (score: 2)
       ttttttttttttggtt  TA-rich tract