1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...catcaacacgtaccttgtactggggtaatcattctctatttaagttgttccatggctatttctttttcttagaacaatgactaatcctgccaattctcagGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATACCAGATCGAAGACCTGGAAATTGTTTCGGCTGATTACATGCTGAGGGTTG
species | Oryza sativa |
transcript | LOC_Os03g12590.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAG GTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATACEST: gi|218498611|gb|FG960368.1|FG960368
genomic: TTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAGgtaaatgttt ... caattctcagGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATAC
EST: TTCCTGCTACTGGGAAA-TTTCAAATGTGCTGAAGTTTATTGTTAAAGAG GTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATACEST: gi|33656418|gb|CF279032.1|CF279032
genomic: TTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAGgtaaatgttt ... caattctcagGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATAC
EST: TTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAG GTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATACEST: gi|58663414|gb|CK052100.1|CK052100
genomic: TTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAGgtaaatgttt ... caattctcagGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATAC
EST: TTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAG GTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATACEST: gi|14571493|gb|BI118861.1|BI118861
genomic: TTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAGgtaaatgttt ... caattctcagGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATAC
EST: TTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAG GTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATACEST: gi|86478723|gb|CI121356.1|CI121356
genomic: TTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAGgtaaatgttt ... caattctcagGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATAC
EST: TTCCTGCTACTGGGAAATTGTCAAATGTGCTAAAGTTTATTGTTAAAGAG GTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATACEST: gi|58654518|gb|CK043198.1|CK043198
genomic: TTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAGgtaaatgttt ... caattctcagGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATAC
EST: TTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAG GTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATACEST: gi|58667540|gb|CK056226.1|CK056226
genomic: TTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAGgtaaatgttt ... caattctcagGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATAC
EST: TTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAG GTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATACEST: gi|427768|gb|D23905.1|D23905
genomic: TTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAGgtaaatgttt ... caattctcagGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATAC
EST: TTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAG GTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATAC
genomic: TTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAGgtaaatgttt ... caattctcagGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATAC
tgttccatggctatttctttttcttagaacaatgactaatcctgccaattctcagGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATACCAGATCGAAGACCTGGAAATTGTTTCGGCTGATTACATGCTGAGGGTTG
gactaat putative branch site (score: 43)
tcctgcc CT-rich tract
tatttctttttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcaacacgtaccttgtactggggtaatcattctctatttaagttgttccatggctatttctttttcttagaacaatgactaatcctgccaattctcagGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATACCAGATCGAAGACCTGGAAATTGTTTCGGCTGATTACATGCTGAGGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
-atcaaca
- - - - - - - -tgtactg
- - - - - - - - - - - - - - -cattctc
- - - - - - - - - - - - - - - - - - - - - - - -ttccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcctgc