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gtgaggaacctgtcatactatttgctatttaattaattgatttagtatcatttttcttatgctaccattcggctgcttcagGTGCGAAGAGCCCTTCTGATCATGCACCAAAGGGATGAAGTGGAGTACAAGAGAGAGCGCCATGTCATTGTCCGGAAGGCTTGAGGTGAACTGTGGAGTA
species | Oryza sativa |
transcript | LOC_Os02g55410.2 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: AGCCACGCCTGATCGATGAACTAAATAGGATGGGGATGAATGAATCCATT GTGCGAAGAGCCCTTCTGATCATGCACCAAAGGGATGAAGTTGAGTACAAGEST: gi|88270726|gb|CI385984.1|CI385984
genomic: AGCGACGCCTGATCGATGAACTAAATAGGATGGGGATGAATGAATCCATTgtgaggaacc ... gctgcttcagGTGCGAAGAGCCCTTCTGATCATGCACCAAAGGGATGAAGTGGAGTACAAG
EST: TAGGATGGGGATGAATGAATCCATT GTGCGAAGAGCCCTTCTGATCATGCACCAAAGGGATGAAGTGGAGTACAAGEST: gi|88266647|gb|CI377549.1|CI377549
genomic: TAGGATGGGGATGAATGAATCCATTgtgaggaacc ... gctgcttcagGTGCGAAGAGCCCTTCTGATCATGCACCAAAGGGATGAAGTGGAGTACAAG
EST: CGCCTGATCGATGAACTAAATAGGATGGGGATGAATGAATCCATT GTGCGAAGAGCCCTTCTGATCATGCACCAAAGGGATGAAGTGGAGTACAAGEST: gi|58687062|gb|CK075749.1|CK075749
genomic: CGCCTGATCGATGAACTAAATAGGATGGGGATGAATGAATCCATTgtgaggaacc ... gctgcttcagGTGCGAAGAGCCCTTCTGATCATGCACCAAAGGGATGAAGTGGAGTACAAG
EST: AGCGACGCCTGATCGATGAACTAAATAGGATGGGGATGAATGAATCCATT GTGCGAAGAGCCCTTCTGATCATGCACCAAAGGGATGAAGTGGAGTACAAGEST: gi|88560112|gb|CI490744.1|CI490744
genomic: AGCGACGCCTGATCGATGAACTAAATAGGATGGGGATGAATGAATCCATTgtgaggaacc ... gctgcttcagGTGCGAAGAGCCCTTCTGATCATGCACCAAAGGGATGAAGTGGAGTACAAG
EST: GCGACGCCTGATCGATGAACTAAATAGGATGGGGATGAATGAATCCATT GTGCGAAGAGCCCTTCTGATCATGCACCAAAGGGATGAAGTGGAGTACAAGEST: gi|88288805|gb|CI517936.1|CI517936
genomic: GCGACGCCTGATCGATGAACTAAATAGGATGGGGATGAATGAATCCATTgtgaggaacc ... gctgcttcagGTGCGAAGAGCCCTTCTGATCATGCACCAAAGGGATGAAGTGGAGTACAAG
EST: GCGACGCCTGATCGATGAACTAAATAGGATGGGGATGAATGAATCCATT GTGCGAAGAGCCCTTCTGATCATGCACCAAAGGGATGAAGTGGAGTACAAGEST: gi|89177890|gb|CI391069.1|CI391069
genomic: GCGACGCCTGATCGATGAACTAAATAGGATGGGGATGAATGAATCCATTgtgaggaacc ... gctgcttcagGTGCGAAGAGCCCTTCTGATCATGCACCAAAGGGATGAAGTGGAGTACAAG
EST: GATGAACTAAATAGGATGGGGATGAATGAATCCATT GTGCGAAGAGCCCTTCTGATCATGCACCAAAGGGATGAAGTGGAGTACAAG
genomic: GATGAACTAAATAGGATGGGGATGAATGAATCCATTgtgaggaacc ... gctgcttcagGTGCGAAGAGCCCTTCTGATCATGCACCAAAGGGATGAAGTGGAGTACAAG
atttaattaattgatttagtatcatttttcttatgctaccattcggctgcttcagGTGCGAAGAGCCCTTCTGATCATGCACCAAAGGGATGAAGTGGAGTACAAGAGAGAGCGCCATGTCATTGTCCGGAAGGCTTGAGGTGAACTGTGGAGTA
ctgcttc CT-rich tract
attaattgatttagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggaacctgtcatactatttgctatttaattaattgatttagtatcatttttcttatgctaccattcggctgcttcagGTGCGAAGAGCCCTTCTGATCATGCACCAAAGGGATGAAGTGGAGTACAAGAGAGAGCGCCATGTCATTGTCCGGAAGGCTTGAGGTGAACTGTGGAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG