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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagtgtttttccatctatacaattagcgacagttgttaacaactattcatttattatagctaattattttttgacagGTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTATAATCATTGGGCGTGCTTTAAGATCGGCATATCCGACGATAAAACCCACA

Basic information

species Oryza sativa
transcript LOC_Os02g11840.2
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88965746|gb|CI006623.1|CI006623
EST:     ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAG                         GTTGCTGACTTCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
genomic: ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAGgtgaagtgtt ... tttttgacagGTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
EST: gi|87021442|gb|CI274049.1|CI274049
EST:     ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAG                         GTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
genomic: ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAGgtgaagtgtt ... tttttgacagGTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
EST: gi|29644063|gb|CB649070.1|CB649070
EST:     ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAG                         GTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
genomic: ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAGgtgaagtgtt ... tttttgacagGTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
EST: gi|33800696|gb|CF326218.1|CF326218
EST:     ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAG                         GTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
genomic: ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAGgtgaagtgtt ... tttttgacagGTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
EST: gi|25801672|gb|CA757633.1|CA757633
EST:     CGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAG                         GTTGCTGACTCCTACTGAAACTTTGTGAAGGCCGTTTTCCTCCACTTGTAT
genomic: CGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAGgtgaagtgtt ... tttttgacagGTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
EST: gi|87021165|gb|CI271972.1|CI271972
EST:     ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAG                         GTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
genomic: ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAGgtgaagtgtt ... tttttgacagGTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
EST: gi|86480883|gb|CI123516.1|CI123516
EST:     ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAG                         GTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
genomic: ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAGgtgaagtgtt ... tttttgacagGTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
EST: gi|86481559|gb|CI124192.1|CI124192
EST:     ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAG                         GTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
genomic: ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAGgtgaagtgtt ... tttttgacagGTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
EST: gi|86478917|gb|CI121550.1|CI121550
EST:     ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAG                         GTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
genomic: ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAGgtgaagtgtt ... tttttgacagGTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
EST: gi|88461084|gb|CI550247.1|CI550247
EST:     ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAG                         GTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
genomic: ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAGgtgaagtgtt ... tttttgacagGTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
EST: gi|86521390|gb|CI161596.1|CI161596
EST:     ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAG                         GTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
genomic: ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAGgtgaagtgtt ... tttttgacagGTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
EST: gi|88267615|gb|CI379550.1|CI379550
EST:     ATAGTTAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAG                         GTTGCTGACTCCTACTGAAACTATTTGAAGGCCGTTTTCCTCCACTTGTAT
genomic: ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAGgtgaagtgtt ... tttttgacagGTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
EST: gi|86886937|gb|CI324358.1|CI324358
EST:     ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAG                         GTTGCTTACTCCTACTGAAAGCTATGTGAAGGCCGTTTTCCTCCACTTGTA
genomic: ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAGgtgaagtgtt ... tttttgacagGTTGCTGACTCCTACTGAAA-CTATGTGAAGGCCGTTTTCCTCCACTTGTA
EST: gi|86477288|gb|CI119921.1|CI119921
EST:     ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAG                         GTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT
genomic: ATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAGgtgaagtgtt ... tttttgacagGTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagcgacagttgttaacaactattcatttattatagctaattattttttgacagGTTGCTGACTCCTACTGAAACTATGTGAAGGCCGTTTTCCTCCACTTGTATAATCATTGGGCGTGCTTTAAGATCGGCATATCCGACGATAAAACCCACA
                                         ttatttttt  CT-rich tract
             ttaacaactattcatt  TA-rich tract