1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtgggatttaagaattgttattctgtgcttttacaaaaaaaaacattttctatatgttccacataacctgctatctgaaatttcagCTTAAATCTTATCTATCAACTGTGTTGGGGGACTCTGAGAAATCAACTCTTGAGGTCCTGATATTCTCCGCCATCGCTCTGGGATTGGTGTTTGTTGGTT
species | Oryza sativa |
transcript | LOC_Os02g05340.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GGGCAATCTTGGGTCTTGGTATTGCATATGCGGGTTCTCAGAAAGAGGAG CTTAAATCTTATCTATCAACTGTGTTGGGGGACTCTGAGAAATCAACTCTTEST: gi|58589708|gb|CF988016.1|CF988016
genomic: GGGCAATCTTGGGTCTTGGTATTGCATATGCGGGTTCTCAGAAAGAGGAGgtgggattta ... gaaatttcagCTTAAATCTTATCTATCAACTGTGTTGGGGGACTCTGAGAAATCAACTCTT
EST: GGGCAATCTTGGGTCTTGGTATTGCATATGCGGGTTCTCAGAAAGAGGAG CTTAAATCTTATCTATCAACTGTGTTGGGGGACTCTGAGAAATCAACTCTTEST: gi|29671491|gb|CB667766.1|CB667766
genomic: GGGCAATCTTGGGTCTTGGTATTGCATATGCGGGTTCTCAGAAAGAGGAGgtgggattta ... gaaatttcagCTTAAATCTTATCTATCAACTGTGTTGGGGGACTCTGAGAAATCAACTCTT
EST: GGGCAATCTTGGGTCTTGGTATTGCATATGCGGGTTCTCAGAAAGAGGAG CTTAAATCTTATCTATCAACTGTGTTGGGGGACTCTGAGAAATCAACTCTTEST: gi|58604809|gb|CK015337.1|CK015337
genomic: GGGCAATCTTGGGTCTTGGTATTGCATATGCGGGTTCTCAGAAAGAGGAGgtgggattta ... gaaatttcagCTTAAATCTTATCTATCAACTGTGTTGGGGGACTCTGAGAAATCAACTCTT
EST: GGGCAATCTTGGGTCTTGGTATTGCATATGCGGGTTCTCAGAAAGAGGAG CTTAAATCTTATCTATCAACTGTGTTGGGGGACTCTGAGAAATCAACTCTTEST: gi|58685643|gb|CK074330.1|CK074330
genomic: GGGCAATCTTGGGTCTTGGTATTGCATATGCGGGTTCTCAGAAAGAGGAGgtgggattta ... gaaatttcagCTTAAATCTTATCTATCAACTGTGTTGGGGGACTCTGAGAAATCAACTCTT
EST: GGGCAATCTTGGGTCTTGGTATTGCATATGCGGGTTCTCAGAAAGAGGAG CTTAAATCTTATCTATCAACTGTGTTGGGGGACTCTGAGAAATCAACTCTTEST: gi|29634005|gb|CB639014.1|CB639014
genomic: GGGCAATCTTGGGTCTTGGTATTGCATATGCGGGTTCTCAGAAAGAGGAGgtgggattta ... gaaatttcagCTTAAATCTTATCTATCAACTGTGTTGGGGGACTCTGAGAAATCAACTCTT
EST: GGGCAATCTTGGGTCTTGGTATTGCATATGCGGGTTCTCAGAAAGAGGAG CTTAAATCTTATCTATCAACTGTGTTGGGGGACTCTGAGAAATCAACTCTTEST: gi|58681049|gb|CK069736.1|CK069736
genomic: GGGCAATCTTGGGTCTTGGTATTGCATATGCGGGTTCTCAGAAAGAGGAGgtgggattta ... gaaatttcagCTTAAATCTTATCTATCAACTGTGTTGGGGGACTCTGAGAAATCAACTCTT
EST: GGGCAATCTTGGGTCTTGGTATTGCATATGCGGGTTCTCAGAAAGAGGAG CTTAAATCTTATCTATCAACTGTGTTGGGGGACTCTGAGAAATCAACTCTT
genomic: GGGCAATCTTGGGTCTTGGTATTGCATATGCGGGTTCTCAGAAAGAGGAGgtgggattta ... gaaatttcagCTTAAATCTTATCTATCAACTGTGTTGGGGGACTCTGAGAAATCAACTCTT
tacaaaaaaaaacattttctatatgttccacataacctgctatctgaaatttcagCTTAAATCTTATCTATCAACTGTGTTGGGGGACTCTGAGAAATCAACTCTTGAGGTCCTGATATTCTCCGCCATCGCTCTGGGATTGGTGTTTGTTGGTT
acataac putative branch site (score: 49)
aaaaaaacattttcta TA-rich tract