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gtctgtatgacactctgagtaaactttttagggtaacactcattctaacttaactgtttcacccttgcagTCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCGGCCAGAACAAACCCATCGAATCCCTCAATTGAACTGGGTCCAGAGTTCAAGAAG
species | Oryza sativa |
transcript | LOC_Os02g02560.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GGTCCCGGTTCCTACCAGTGAAGGCAACATCAGATTTGCAGCTAGTACAG TCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCGGCCAGAEST: gi|86595013|gb|CI258267.1|CI258267
genomic: GGTCCCGGTTCCTACCAGTGAAGGCAACATCAGATTTGCAGCTAGTACAGgtctgtatga ... acccttgcagTCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCGGCCAGA
EST: CCGGTTCCTACCAGTGAAGGCAACATCAGATTTGCAGCTAGTACAG TCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCGGCCAGAEST: gi|7332555|gb|AU085901.1|AU085901
genomic: CCGGTTCCTACCAGTGAAGGCAACATCAGATTTGCAGCTAGTACAGgtctgtatga ... acccttgcagTCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCGGCCAGA
EST: TACCAGTGAAGGCAACATCAGATTTGCAGCTAGTACAG TCTGATCTATATACCTTGGTTGATGNCTTTGTTAC-CGCAACCCGGCCAGAEST: gi|86479595|gb|CI122228.1|CI122228
genomic: TACCAGTGAAGGCAACATCAGATTTGCAGCTAGTACAGgtctgtatga ... acccttgcagTCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCGGCCAGA
EST: GGTCCCGGTTCCTACCAGTGAAGGCAACATCAGATTTGCAGCTAGTACAG TCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCGGCCAGAEST: gi|66922584|gb|CX109432.1|CX109432
genomic: GGTCCCGGTTCCTACCAGTGAAGGCAACATCAGATTTGCAGCTAGTACAGgtctgtatga ... acccttgcagTCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCGGCCAGA
EST: GGTCCCGGTTCCTACCAGTGAAGGCTACATCAGATTTGCAGCTAGTACAG TCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCGGCCAGAEST: gi|86823815|gb|CI258831.1|CI258831
genomic: GGTCCCGGTTCCTACCAGTGAAGGCAACATCAGATTTGCAGCTAGTACAGgtctgtatga ... acccttgcagTCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCGGCCAGA
EST: GGTCCCGGTTCCTACCAGTGAAGGCAACATCAGATTTGCAGCTAGTACAG TCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCGGCCAGA
genomic: GGTCCCGGTTCCTACCAGTGAAGGCAACATCAGATTTGCAGCTAGTACAGgtctgtatga ... acccttgcagTCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCGGCCAGA
tgagtaaactttttagggtaacactcattctaacttaactgtttcacccttgcagTCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCGGCCAGAACAAACCCATCGAATCCCTCAATTGAACTGGGTCCAGAGTTCAAGAAG
tttcaccctt CT-rich tract
aaacttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtatgacactctgagtaaactttttagggtaacactcattctaacttaactgtttcacccttgcagTCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGCAACCCGGCCAGAACAAACCCATCGAATCCCTCAATTGAACTGGGTCCAGAGTTCAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG