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...atgggagatttttgcattgacaatactactttctttaagttataactgtacgatgcatcttattttggtctttcaactaaggcatccaatggttttgtagTGATGTGAGGACCAAGGCTTTCCAGGCTACTGATCAATTCTTGCAAATAGCAAAACAACATCATGAAAAG
species | Oryza sativa |
transcript | LOC_Os01g60440.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GCAACTCGTATTCTGCCTAACGTTGTTGTCCTCACATTTGATCCAGATAG TGATGTGAGGACCAAGGCTTTCCAGGCTACTGATCAATTCTTGCAAATAGCEST: gi|701421|gb|D47712.1|D47712
genomic: GCAACTCGTATTCTGCCTAACGTTGTTGTCCTCACATTTGATCCAGATAGgtataacata ... ggttttgtagTGATGTGAGGACCAAGGCTTTCCAGGCTACTGATCAATTCTTGCAAATAGC
EST: GCAACTCGTATTCTGCCTAACGTTGTTGTCCTCACATTTGATCCAGATAG TGATGTGAGGACCAAGGCTTTCCAGGCTACTGATCAATTCTTGCAAATAGGEST: gi|109974420|gb|DT806899.1|DT806899
genomic: GCAACTCGTATTCTGCCTAACGTTGTTGTCCTCACATTTGATCCAGATAGgtataacata ... ggttttgtagTGATGTGAGGACCAAGGCTTTCCAGGCTACTGATCAATTCTTGCAAATAG-
EST: GCAACTCGTATTCTGCCTAACGTTGTTGTCCTCACATTTGATCCAAATAG TGATGTGAGGACCAAGGCTTTCCAAGCTACTGATCAATTCTTGCAAATAGCEST: gi|701323|gb|D47614.1|D47614
genomic: GCAACTCGTATTCTGCCTAACGTTGTTGTCCTCACATTTGATCCAGATAGgtataacata ... ggttttgtagTGATGTGAGGACCAAGGCTTTCCAGGCTACTGATCAATTCTTGCAAATAGC
EST: GCAACTCGTATTCTGCCTAACGTTGTTGTCCTCACATTTGATCCAGATAG TGATGTGAGGACCAAGGCTTTCCAGGCTACTGATCAATTCTTGCAAATAGCEST: gi|300215776|gb|HO088402.1|HO088402
genomic: GCAACTCGTATTCTGCCTAACGTTGTTGTCCTCACATTTGATCCAGATAGgtataacata ... ggttttgtagTGATGTGAGGACCAAGGCTTTCCAGGCTACTGATCAATTCTTGCAAATAGC
EST: GCAACTCGTATTCTGCCTAACGTTGTTGTCCTCACATTTGATCCAGATAG TGATGTGAGGACCAAGGCTTTCCAGGCTACTGATCAATTCTTGCAAATAGCEST: gi|426538|gb|D22359.1|D22359
genomic: GCAACTCGTATTCTGCCTAACGTTGTTGTCCTCACATTTGATCCAGATAGgtataacata ... ggttttgtagTGATGTGAGGACCAAGGCTTTCCAGGCTACTGATCAATTCTTGCAAATAGC
EST: GCAACTCGTATTCTGCCTAACGTTGTTGTCCTCACATTTGATCCAGATAG TGATGTGAGGACCAAGGCTTTCCAGGCTACTGATCAATTCTTGCAAATAGCEST: gi|29640582|gb|CB645591.1|CB645591
genomic: GCAACTCGTATTCTGCCTAACGTTGTTGTCCTCACATTTGATCCAGATAGgtataacata ... ggttttgtagTGATGTGAGGACCAAGGCTTTCCAGGCTACTGATCAATTCTTGCAAATAGC
EST: GCAACTCCTATTCAGCCTAACGTTGTTGTCCTCACATTTGATCCAGATAG TGATGTGAGGACCAAGGCTTTCCAGGCTACTGATCGATTCTTGCAAATAGCEST: gi|58607870|gb|CK035903.1|CK035903
genomic: GCAACTCGTATTCTGCCTAACGTTGTTGTCCTCACATTTGATCCAGATAGgtataacata ... ggttttgtagTGATGTGAGGACCAAGGCTTTCCAGGCTACTGATCAATTCTTGCAAATAGC
EST: GCAACTCGTATTCTGCCTAACGTTGTTGTCCTCACATTTGATCCAGATAG TGATGTGAGGACCAAGGCTTTCCAGGCTACTGATCAATTCTTGCAAATAGC
genomic: GCAACTCGTATTCTGCCTAACGTTGTTGTCCTCACATTTGATCCAGATAGgtataacata ... ggttttgtagTGATGTGAGGACCAAGGCTTTCCAGGCTACTGATCAATTCTTGCAAATAGC
ctgtacgatgcatcttattttggtctttcaactaaggcatccaatggttttgtagTGATGTGAGGACCAAGGCTTTCCAGGCTACTGATCAATTCTTGCAAATAGCAAAACAACATCATGAAAAG
atcttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgggagatttttgcattgacaatactactttctttaagttataactgtacgatgcatcttattttggtctttcaactaaggcatccaatggttttgtagTGATGTGAGGACCAAGGCTTTCCAGGCTACTGATCAATTCTTGCAAATAGCAAAACAACATCATGAAAAG
- - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - cgatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatcca