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...gttcgtggcagggttctatgtaccatgcaatccttttattttgatgtcgtaaactccaaatccccactgatttgtcctaaccctgtcgctgcattaccagATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTTGAT
species | Oryza sativa |
transcript | LOC_Os01g56630.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGG ATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTEST: gi|88458795|gb|CI558456.1|CI558456
genomic: CCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGgtaatgtttt ... gcattaccagATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGT
EST: CTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGG ATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTEST: gi|5004229|gb|AU069378.1|AU069378
genomic: CTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGgtaatgtttt ... gcattaccagATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGT
EST: CCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGG ATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTEST: gi|89167227|gb|CI104513.1|CI104513
genomic: CCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGgtaatgtttt ... gcattaccagATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGT
EST: CCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGG ATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTEST: gi|33800537|gb|CF326139.1|CF326139
genomic: CCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGgtaatgtttt ... gcattaccagATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGT
EST: CCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGG ATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTEST: gi|88438333|gb|CI541077.1|CI541077
genomic: CCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGgtaatgtttt ... gcattaccagATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGT
EST: CCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGG ATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTEST: gi|12622135|gb|AU172348.1|AU172348
genomic: CCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGgtaatgtttt ... gcattaccagATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGT
EST: CCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGG ATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTEST: gi|5004218|gb|AU069367.1|AU069367
genomic: CCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGgtaatgtttt ... gcattaccagATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGT
EST: CCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGG ATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTEST: gi|86497820|gb|CI140453.1|CI140453
genomic: CCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGgtaatgtttt ... gcattaccagATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGT
EST: CCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGG ATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTEST: gi|38479720|gb|CF963809.1|CF963809
genomic: CCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGgtaatgtttt ... gcattaccagATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGT
EST: AGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGG ATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGT
genomic: AGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGgtaatgtttt ... gcattaccagATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGT
gtcgtaaactccaaatccccactgatttgtcctaaccctgtcgctgcattaccagATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTTGAT
tcctaac putative branch site (score: 1)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtggcagggttctatgtaccatgcaatccttttattttgatgtcgtaaactccaaatccccactgatttgtcctaaccctgtcgctgcattaccagATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT