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gtaatttgtgatcttaaaacatactttggtatctttggtttttttgtccttgggctaattatgtgtttatgtatttaaaagcagTTCCCTCTTTACAAATTCGAATTGGTTTACATTTGATGGAGAGAGAGGTATTACTGACCGTTTGGCTGCGGTTCCTTCGTCTTCACCTAATTCAGAGGAG
species | Oryza sativa |
transcript | LOC_Os01g40340.2 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGGCAGEST: gi|58691100|gb|CK079787.1|CK079787
genomic: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGAT-G--Ggtaatttgtg ... ttaaaagc
EST: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGG TTCCCTCTTTACAAATTCGAATTGGTTTACATTTGATGGAGAGAGAGGTATEST: gi|29680847|gb|CB677122.1|CB677122
genomic: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGGgtaatttgtg ... ttaaaagcagTTCCCTCTTTACAAATTCGAATTGGTTTACATTTGATGGAGAGAGAGGTAT
EST: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGG TTCCCTCTTTACAAATTCGAATTGGTTTACATTTGATEST: gi|38473714|gb|CF957846.1|CF957846
genomic: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGGgtaatttgtg ... ttaaaagcagTTCCCTCTTTACAAATTCGAATTGGTTTACATTTGAT
EST: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGG TTCCCTCTTTACAAATTCGAATTGGTTTACATTTGATGGAGAGAGAGGTATEST: gi|58679221|gb|CK067908.1|CK067908
genomic: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGGgtaatttgtg ... ttaaaagcagTTCCCTCTTTACAAATTCGAATTGGTTTACATTTGATGGAGAGAGAGGTAT
EST: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGG CEST: gi|58679221|gb|CK067908.1|CK067908
genomic: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGGgtaatttgtg ... ttaaaagcag-
EST: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGG CEST: gi|58679221|gb|CK067908.1|CK067908
genomic: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGGgtaatttgtg ... ttaaaagcag-
EST: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGG CEST: gi|58679221|gb|CK067908.1|CK067908
genomic: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGGgtaatttgtg ... ttaaaagcag-
EST: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGG CEST: gi|29680806|gb|CB677081.1|CB677081
genomic: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGGgtaatttgtg ... ttaaaagcag-
EST: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGG TTCCCTCTTTACEST: gi|88327344|gb|CI645125.1|CI645125
genomic: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGGgtaatttgtg ... ttaaaagcagTTCCCTCTTTAC
EST: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGG CEST: gi|88327344|gb|CI645125.1|CI645125
genomic: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGGgtaatttgtg ... ttaaaagcag-
EST: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGG CEST: gi|88327344|gb|CI645125.1|CI645125
genomic: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGGgtaatttgtg ... ttaaaagcag-
EST: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGG CEST: gi|88327344|gb|CI645125.1|CI645125
genomic: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGGgtaatttgtg ... ttaaaagcag-
EST: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGG CEST: gi|8956745|gb|BE230548.1|BE230548
genomic: TCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGGgtaatttgtg ... ttaaaagcag-
EST: GTAATATCTTCACTGCGACTGGGAGATGATCAGGATGGCAG
genomic: GTAATATCTTCACTGCGACTGGGAGATGATCAGGAT-G--Ggtaatttgtg ... ttaaaagc
tatctttggtttttttgtccttgggctaattatgtgtttatgtatttaaaagcagTTCCCTCTTTACAAATTCGAATTGGTTTACATTTGATGGAGAGAGAGGTATTACTGACCGTTTGGCTGCGGTTCCTTCGTCTTCACCTAATTCAGAGGAG
ggctaat putative branch site (score: 20)
taattatgtgtttatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttgtgatcttaaaacatactttggtatctttggtttttttgtccttgggctaattatgtgtttatgtatttaaaagcagTTCCCTCTTTACAAATTCGAATTGGTTTACATTTGATGGAGAGAGAGGTATTACTGACCGTTTGGCTGCGGTTCCTTCGTCTTCACCTAATTCAGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG