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...tattgtgaaaatttctcttttaatcatacgtagtgtgcgataagaaatgcctataaattactgaatattgttacatgactattttttcctcttttgacagCACTTGGACGTTTCTCAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAA
species | Oryza sativa |
transcript | LOC_Os01g36840.2 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: ATATTGATGCCCTTGGATCCAAGACAGACAGTGCTGACCAAGATGGATCT CACTTGGACGTTTCTCAACGGAGACGGTTTAACGAATACAGGACTTTGACAEST: gi|2443000|gb|C74771.1|C74771
genomic: ATATTGATGCCCTTGGATCCAAGACAGACAGTGCTGACCAAGATGGATCTgtaagtatca ... cttttgacagCACTTGGACGTTTCTCAACGGAGACGGTTTAACGAATACAGGACTTTGACA
EST: ATATTGATGCCCTTGGATCCAAGACAGACAGTGCTGACCAAGATGGATCT CACTTGGACGTTEST: gi|116875003|gb|EC365511.1|EC365511
genomic: ATATTGATGCCCTTGGATCCAAGACAGACAGTGCTGACCAAGATGGATCTgtaagtatca ... cttttgacagCACTTGGACGTT
EST: ATATTGATGCCCTTGGATCCAAGACAGACAGTGCTGACCAAGATGGATCT CACTTGGACGTTTCTCAACGGAGACGGTTTAACGAATACAGGACTTTGACAEST: gi|116875534|gb|EC366042.1|EC366042
genomic: ATATTGATGCCCTTGGATCCAAGACAGACAGTGCTGACCAAGATGGATCTgtaagtatca ... cttttgacagCACTTGGACGTTTCTCAACGGAGACGGTTTAACGAATACAGGACTTTGACA
EST: ATATTGATGCCCTTGGATCCAAGACAGACAGTGCTGACCAAGATGGATCT CACTTGGACGTTTCTCAACGGAGACGGTTTAACGAATACAGGACTTTGACA
genomic: ATATTGATGCCCTTGGATCCAAGACAGACAGTGCTGACCAAGATGGATCTgtaagtatca ... cttttgacagCACTTGGACGTTTCTCAACGGAGACGGTTTAACGAATACAGGACTTTGACA
aatgcctataaattactgaatattgttacatgactattttttcctcttttgacagCACTTGGACGTTTCTCAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAA
ctattttttcctcttt CT-rich tract
tataaattactgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgtgaaaatttctcttttaatcatacgtagtgtgcgataagaaatgcctataaattactgaatattgttacatgactattttttcctcttttgacagCACTTGGACGTTTCTCAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAA
- - - - - - - - - - - - - - - - - - - - - - -aatgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttacatg