1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtgagttttcagataatgtttatacatatgtatttggccggaaaaatatttcatgggatctatcggctgtatttatgcatatgcttatacatatgtagatcctttgtaacattctgattaccttttttgctagGTATTGCTATCTATTAGATGATTTGACACCAGAATTGTTGGAGGGCAAATCGTCAAGCTATGAGGATTTGCAAGAGTACCTTCGTACCCGAGGACGTGAA
species | Oryza sativa |
transcript | LOC_Os01g21820.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: ACCCCGAGAGAAGATTGGGATCTTAGCAAACTGATAGCTAAACTTCAACA GTATTGCTATCTATTAGATGATTTGACACCAGAATTGTTGGAGGGCAAATCEST: gi|29676134|gb|CB672409.1|CB672409
genomic: ACCCCGAGAGAAGATTGGGATCTTAGCAAACTGATAGCTAAACTTCAACAgtgagttttc ... tttttgctagGTATTGCTATCTATTAGATGATTTGACACCAGAATTGTTGGAGGGCAAATC
EST: AGAGAAGATTGGGATCTTAGCAAACTGATAGCTAAACTTCAACA GTATTGCTATCTATTAGATGATTTGACACCAGAATTGTTGGAGGGCAAATCEST: gi|29615684|gb|CB620696.1|CB620696
genomic: AGAGAAGATTGGGATCTTAGCAAACTGATAGCTAAACTTCAACAgtgagttttc ... tttttgctagGTATTGCTATCTATTAGATGATTTGACACCAGAATTGTTGGAGGGCAAATC
EST: ACCCCGAGAGAAGATTGGGATCTTAGCAAACTGATAGCTAAACTTCAACA GTATTGCTATCTATTAGATGATTTGACACCAGAATTGTTGGAGGGCAAATCEST: gi|29676704|gb|CB672979.1|CB672979
genomic: ACCCCGAGAGAAGATTGGGATCTTAGCAAACTGATAGCTAAACTTCAACAgtgagttttc ... tttttgctagGTATTGCTATCTATTAGATGATTTGACACCAGAATTGTTGGAGGGCAAATC
EST: AGAGAAGATTGGGATCTTAGCAAACTGATAGCTAAACTTCAACA GTATTGCTATCTATTAGATGATTTGACACCAGAATTGTTGGAGGGCAAATCEST: gi|27577941|gb|CB000636.1|CB000636
genomic: AGAGAAGATTGGGATCTTAGCAAACTGATAGCTAAACTTCAACAgtgagttttc ... tttttgctagGTATTGCTATCTATTAGATGATTTGACACCAGAATTGTTGGAGGGCAAATC
EST: ACCCCGAGAGAAGATTGGGATCTTAGCAAACTGATAGCTAAACTTCAACA GTATTGCTATCTATTAGATGATTTGACACCAGAATTGTTGGAGGGCAAATCEST: gi|58593464|gb|CF991772.1|CF991772
genomic: ACCCCGAGAGAAGATTGGGATCTTAGCAAACTGATAGCTAAACTTCAACAgtgagttttc ... tttttgctagGTATTGCTATCTATTAGATGATTTGACACCAGAATTGTTGGAGGGCAAATC
EST: ACCCCGAGAGAAGATTGGGATCTTAGCAAACTGATAGCTAAACTTCAACA GTATTGCTATCTATTAGATGATTTGACACCAGAATTGTTGGAGGGCAAATC
genomic: ACCCCGAGAGAAGATTGGGATCTTAGCAAACTGATAGCTAAACTTCAACAgtgagttttc ... tttttgctagGTATTGCTATCTATTAGATGATTTGACACCAGAATTGTTGGAGGGCAAATC
atatgcttatacatatgtagatcctttgtaacattctgattaccttttttgctagGTATTGCTATCTATTAGATGATTTGACACCAGAATTGTTGGAGGGCAAATCGTCAAGCTATGAGGATTTGCAAGAGTACCTTCGTACCCGAGGACGTGAA
ttaccttttttgct CT-rich tract
ttatacatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttcagataatgtttatacatatgtatttggccggaaaaatatttcatgggatctatcggctgtatttatgcatatgcttatacatatgtagatcctttgtaacattctgattaccttttttgctagGTATTGCTATCTATTAGATGATTTGACACCAGAATTGTTGGAGGGCAAATCGTCAAGCTATGAGGATTTGCAAGAGTACCTTCGTACCCGAGGACGTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA