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...tttagcccactgtttaatgtctcttcataagataatcactgccgcactccccgtctcatctgttttacgaccttgtttatcctctgagcacatgttacagACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACATTCGTTCGATTCATCATTCATGTGGTGGAGTTGGGAGAAAAATCGGTAGA
species | Oryza sativa |
transcript | LOC_Os01g14810.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CAAATTTTCTACATTATACTCCATTCATGTATTTCCAATCACAAGAACAG ACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACATEST: gi|58677344|gb|CK066031.1|CK066031
genomic: CAAATTTTCTACATTATACTCCATTCATGTATTTCCAATCACAAGAACAGgtaattgcaa ... catgttacagACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACAT
EST: CAAATTTTCTACATTATACTCCATTCATGTATTTCCAATCACAAGAACAG ACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACATEST: gi|29627737|gb|CB632748.1|CB632748
genomic: CAAATTTTCTACATTATACTCCATTCATGTATTTCCAATCACAAGAACAGgtaattgcaa ... catgttacagACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACAT
EST: CAAATTTTCTACATTATACTCCATTCATGTATTTCCAATCACAAGAACAG ACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACATEST: gi|58693415|gb|CK082102.1|CK082102
genomic: CAAATTTTCTACATTATACTCCATTCATGTATTTCCAATCACAAGAACAGgtaattgcaa ... catgttacagACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACAT
EST: CAAATTTTCTACATTATACTCCATTCATGTATTTCCAATCACAAGAACAG ACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACATEST: gi|86429965|gb|CI082388.1|CI082388
genomic: CAAATTTTCTACATTATACTCCATTCATGTATTTCCAATCACAAGAACAGgtaattgcaa ... catgttacagACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACAT
EST: ACATTATACTCCATTCATGTATTTCCAATCACAAGAACAG ACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACATEST: gi|58689317|gb|CK078004.1|CK078004
genomic: ACATTATACTCCATTCATGTATTTCCAATCACAAGAACAGgtaattgcaa ... catgttacagACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACAT
EST: CAAATTTTCTACATTATACTCCATTCATGTATTTCCAATCACAAGAACAG ACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACATEST: gi|87004547|gb|CI300869.1|CI300869
genomic: CAAATTTTCTACATTATACTCCATTCATGTATTTCCAATCACAAGAACAGgtaattgcaa ... catgttacagACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACAT
EST: CAAATTTTCTACATTATACTCCATTCATGTATTTCCAATCACAAGAACAG ACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACATEST: gi|86886647|gb|CI312532.1|CI312532
genomic: CAAATTTTCTACATTATACTCCATTCATGTATTTCCAATCACAAGAACAGgtaattgcaa ... catgttacagACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACAT
EST: CAAATTTTCTACATTATACTCCATTCATGTATTTCCAATCACAAGAACAG ACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACATEST: gi|58674456|gb|CK063143.1|CK063143
genomic: CAAATTTTCTACATTATACTCCATTCATGTATTTCCAATCACAAGAACAGgtaattgcaa ... catgttacagACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACAT
EST: ACACTTTTCTACATTATACTCCATTCATGTATTTCCAATCACAAGAACAG ACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACAT
genomic: AAA-TTTTCTACATTATACTCCATTCATGTATTTCCAATCACAAGAACAGgtaattgcaa ... catgttacagACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACAT
actccccgtctcatctgttttacgaccttgtttatcctctgagcacatgttacagACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACATTCGTTCGATTCATCATTCATGTGGTGGAGTTGGGAGAAAAATCGGTAGA
ttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagcccactgtttaatgtctcttcataagataatcactgccgcactccccgtctcatctgttttacgaccttgtttatcctctgagcacatgttacagACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACTGACATTCGTTCGATTCATCATTCATGTGGTGGAGTTGGGAGAAAAATCGGTAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - ctgccgc