1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtgagctgcaaatctgtacttgttgagcatctggcattatgaactcactgttttaaatcctatgccatttgactaccaacttttactaaagagacatcgtgctatgcatatttagcacaaaaaaatgattttgtaaaacgtgataatgcataactcatgatgatccatccgtatccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG
species | Oryza sativa |
transcript | LOC_Os01g09320.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GTACTGCTGAAGAAGCATATAATTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|29668943|gb|CB665218.1|CB665218
genomic: GTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|58689010|gb|CK077697.1|CK077697
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAACTGGAGCCA- GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|218502213|gb|FG961004.1|FG961004
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAACTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|29640538|gb|CB645547.1|CB645547
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|218490049|gb|FG963619.1|FG963619
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAACTGGAAGCCAG G-TCGTGCAGTATTTGCCAGCEST: gi|58604549|gb|CK015077.1|CK015077
genomic: CACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGA-GCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGC
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAACTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|29642463|gb|CB647470.1|CB647470
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|218479902|gb|FG948663.1|FG948663
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAACTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|218493259|gb|FG949070.1|FG949070
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAACTGNGAGCCA- GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAEST: gi|58671293|gb|CK059979.1|CK059979
genomic: CACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTG-GAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAA
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAACTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|29630820|gb|CB635829.1|CB635829
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAACTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|29663066|gb|CB659341.1|CB659341
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|29625639|gb|CB630650.1|CB630650
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: GAAGCATATAACGGGAGCCGG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|58673473|gb|CK062159.1|CK062159
genomic: GAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAACTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|87041398|gb|CI196020.1|CI196020
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: GAAGAAGCATATAATTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|58585822|gb|CF984130.1|CF984130
genomic: GAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAACTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|29645566|gb|CB650573.1|CB650573
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|29626361|gb|CB631372.1|CB631372
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAACTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|87041092|gb|CI195714.1|CI195714
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|29681753|gb|CB678028.1|CB678028
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|29626362|gb|CB631373.1|CB631373
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAACTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|218502862|gb|FG946696.1|FG946696
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAACTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|88197857|gb|CI197707.1|CI197707
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|218497744|gb|FG966597.1|FG966597
genomic: CTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAACTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|88198739|gb|CI198589.1|CI198589
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|8956808|gb|BE230611.1|BE230611
genomic: CACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAG GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATEST: gi|86519039|gb|CI159245.1|CI159245
genomic: CCACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
EST: ACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGTAGCCAG GGTCGTCCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
genomic: ACATCACACTCTGAGTGTACTGCTGAAGAAGCATATAATTGGAGCCAGgtgagctgca ... atccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAAT
attttgtaaaacgtgataatgcataactcatgatgatccatccgtatccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG
gcataac putative branch site (score: 51)
tatcctt putative PPT
tgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctgcaaatctgtacttgttgagcatctggcattatgaactcactgttttaaatcctatgccatttgactaccaacttttactaaagagacatcgtgctatgcatatttagcacaaaaaaatgattttgtaaaacgtgataatgcataactcatgatgatccatccgtatccttgcagGGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG