Sequence
atgc intronic sequence ATGC exonic sequence...tttctgcaaaagttgatgttatacacagggtgcctttgcatagacataactgtcatggaacaaactagtcactgatgttattttcttttctttaatgtagGTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAACACAAGGGAAACTTAGTGCTCCACGGATATTGCGGATTCACAAA
Basic information
species | Oryza sativa |
transcript | LOC_Os12g06810.4 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os12g06810.3 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G167999_T02 (Zea mays), 3'ss of exon 14
------tttctgcaaaagttgatgttatacacagggtgcctttgcatagacataactgtcatggaacaaactagtcactgatgttattttcttttctttaatgtagGTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAACACAAGGGAAACTTAGTGCTCCACGGATATTGCGGATTCACAAA
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taatgatgccccctgctatataaatctgacacagggtgcttt---gtaaccattgctttcataagtta---ttttttctgatgcttattttctttatataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33796033|gb|CF323884.1|CF323884EST: TGGATTGTGGACTGTGTTGAGCATAATCGATTTCCAAAAGAGA-TACAAA GTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAAC
genomic: TGGATTGTGGACTGTGTTGAGCATAATCGATTTCCAAAAGAGAATACAAAgtaattgctc ... tttaatgtagGTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataactgtcatggaacaaactagtcactgatgttattttcttttctttaatgtagGTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAACACAAGGGAAACTTAGTGCTCCACGGATATTGCGGATTCACAAA
tgttattttcttttct CT-rich tract
atgttattttcttttc TA-rich tract