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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttctgcaaaagttgatgttatacacagggtgcctttgcatagacataactgtcatggaacaaactagtcactgatgttattttcttttctttaatgtagGTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAACACAAGGGAAACTTAGTGCTCCACGGATATTGCGGATTCACAAA

Basic information

species Oryza sativa
transcript LOC_Os12g06810.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g06810.3 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G167999_T02 (Zea mays), 3'ss of exon 14
------tttctgcaaaagttgatgttatacacagggtgcctttgcatagacataactgtcatggaacaaactagtcactgatgttattttcttttctttaatgtagGTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAACACAAGGGAAACTTAGTGCTCCACGGATATTGCGGATTCACAAA
      |  |  |     |  |  |   ||||||||||| ||    ||  |||  || ||||     |   |  |  |||||| |  |||  ||| | ||||| || || || || || || || ||||||||||| || |||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||| 
taatgatgccccctgctatataaatctgacacagggtgcttt---gtaaccattgctttcataagtta---ttttttctgatgcttattttctttatataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27554489|gb|CA998389.1|CA998389
EST:     GTGGACTGTGTTGAGCATAATCGATTTCCAAAAGAGAATACAAA                         GTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAAC
genomic: GTGGACTGTGTTGAGCATAATCGATTTCCAAAAGAGAATACAAAgtaattgctc ... tttaatgtagGTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAAC
EST: gi|29666969|gb|CB663244.1|CB663244
EST:     TGGATTGTGGACTGTGTTGAGCATAATCGATTTCCAAAAGAGAATACAAA                         GTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAAC
genomic: TGGATTGTGGACTGTGTTGAGCATAATCGATTTCCAAAAGAGAATACAAAgtaattgctc ... tttaatgtagGTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAAC
EST: gi|33796033|gb|CF323884.1|CF323884
EST:     TGGATTGTGGACTGTGTTGAGCATAATCGATTTCCAAAAGAGA-TACAAA                         GTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAAC
genomic: TGGATTGTGGACTGTGTTGAGCATAATCGATTTCCAAAAGAGAATACAAAgtaattgctc ... tttaatgtagGTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAAC
EST: gi|29683579|gb|CB679854.1|CB679854
EST:     GTGTTGAGCATAATCGATTTCCAAAAGAGAATACAAA                         GTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAAC
genomic: GTGTTGAGCATAATCGATTTCCAAAAGAGAATACAAAgtaattgctc ... tttaatgtagGTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAAC
EST: gi|58600096|gb|CK010624.1|CK010624
EST:     TGGATTGTGGACTGTGTTGAGCATAATCGATTTCCAAAAGAGAATACAAA                         GTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAAC
genomic: TGGATTGTGGACTGTGTTGAGCATAATCGATTTCCAAAAGAGAATACAAAgtaattgctc ... tttaatgtagGTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAAC
EST: gi|29670914|gb|CB667189.1|CB667189
EST:     CTGTGTTGAGCATAATCGATTTCCAAAAGAGAATACAAA                         GTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAAC
genomic: CTGTGTTGAGCATAATCGATTTCCAAAAGAGAATACAAAgtaattgctc ... tttaatgtagGTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataactgtcatggaacaaactagtcactgatgttattttcttttctttaatgtagGTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAACACAAGGGAAACTTAGTGCTCCACGGATATTGCGGATTCACAAA
                              tgttattttcttttct  CT-rich tract
                             atgttattttcttttc  TA-rich tract