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gtacgtgcatatggtcttctaacttacctgttctatactgtttggcaagcttttattcattcccaatatttcatctttggtactgagtctgtgcatccttgtctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAG
species | Oryza sativa |
transcript | LOC_Os12g01140.4 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAEST: gi|25806002|gb|CA761963.1|CA761963
genomic: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: CTATGCGAGCATCCAATTCATTTGTGGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAEST: gi|66913937|gb|CX100785.1|CX100785
genomic: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCAATACAAGCGCTGTTGACTGGTGGGCTCTAEST: gi|29621738|gb|CB626749.1|CB626749
genomic: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: GCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAEST: gi|29623925|gb|CB628936.1|CB628936
genomic: GCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAEST: gi|29630467|gb|CB635476.1|CB635476
genomic: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAEST: gi|29641401|gb|CB646408.1|CB646408
genomic: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: CATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAEST: gi|29663823|gb|CB660098.1|CB660098
genomic: CATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: CATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAEST: gi|29678745|gb|CB675020.1|CB675020
genomic: CATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAEST: gi|29622723|gb|CB627734.1|CB627734
genomic: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACEST: gi|88299110|gb|CI570080.1|CI570080
genomic: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATAC
EST: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAEST: gi|29630120|gb|CB635129.1|CB635129
genomic: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAEST: gi|29634078|gb|CB639087.1|CB639087
genomic: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: AGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCTT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAEST: gi|29672021|gb|CB668296.1|CB668296
genomic: AGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: GCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAEST: gi|58695041|gb|CK083728.1|CK083728
genomic: GCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAEST: gi|29623926|gb|CB628937.1|CB628937
genomic: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAEST: gi|29624138|gb|CB629149.1|CB629149
genomic: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAEST: gi|29646711|gb|CB651718.1|CB651718
genomic: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAEST: gi|33680724|gb|CF308963.1|CF308963
genomic: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAEST: gi|29622724|gb|CB627735.1|CB627735
genomic: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAEST: gi|29674379|gb|CB670654.1|CB670654
genomic: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: NTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAEST: gi|29677072|gb|CB673347.1|CB673347
genomic: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
EST: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCT GAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
genomic: CTATGCGAGCATCCAATTCATTTGTTGGCACGGAGGAGTACATTGCGCCTgtacgtgcat ... ctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTA
cattcccaatatttcatctttggtactgagtctgtgcatccttgtctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAG
tccttgtct CT-rich tract
aatatttcatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgcatatggtcttctaacttacctgttctatactgtttggcaagcttttattcattcccaatatttcatctttggtactgagtctgtgcatccttgtctgtttgcagGAGATTATTACAGGAGCTGGCCATACAAGCGCTGTTGATTGGTGGGCTCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG