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...gaagaaatcttatgagggaagaagttggactggtgcaaatttttataaatccatttggaagatttcgtcactgatttttattttttatgataccaaacagGTTTACGTAAACATTAAAGATGATCAAGCTCATGCAGTGAATACTGCCTGGGCAATGTTAGCTTTAATTTGTGCAGGACAG
species | Oryza sativa |
transcript | LOC_Os11g35710.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ATATTACTAAG GTTTACGTAAACATTAAAGATGATC-AGCTCATGCAGTGAATACTGCCTGGEST: gi|29639294|gb|CB644303.1|CB644303
genomic: ATATTACTAAGgtaggttttt ... taccaaacagGTTTACGTAAACATTAAAGATGATCAAGCTCATGCAGTGAATACTGCCTGG
EST: AGCTCGATACTGGTGGGTGGGGAGAAAGTTATGTCTCTAATATTACTAAG GTTTACGTAAACATTAAAGATGATCAAGCTCATGCAGTGAATACTGCCTGGEST: gi|58691093|gb|CK079780.1|CK079780
genomic: AGCTCGATACTGGTGGGTGGGGAGAAAGTTATGTCTCTAATATTACTAAGgtaggttttt ... taccaaacagGTTTACGTAAACATTAAAGATGATCAAGCTCATGCAGTGAATACTGCCTGG
EST: AGCTCGATACTGGTGGGTGGGGAGAAAGTTATGTCTCTAATATTACTAAG GTTTACGTAAACATTAAAGATGATCAAGCTCATGCAGTGAATACTGCCTGGEST: gi|29636672|gb|CB641681.1|CB641681
genomic: AGCTCGATACTGGTGGGTGGGGAGAAAGTTATGTCTCTAATATTACTAAGgtaggttttt ... taccaaacagGTTTACGTAAACATTAAAGATGATCAAGCTCATGCAGTGAATACTGCCTGG
EST: AGCTCGATACTGGTGGGTGGGGAGAAAGTTATGTCTCTAATATTACTAAG GTTTACGTAAACATTAAAGATGATCAAGCTCATGCAGTGAATACTGCCTGG
genomic: AGCTCGATACTGGTGGGTGGGGAGAAAGTTATGTCTCTAATATTACTAAGgtaggttttt ... taccaaacagGTTTACGTAAACATTAAAGATGATCAAGCTCATGCAGTGAATACTGCCTGG
taaatccatttggaagatttcgtcactgatttttattttttatgataccaaacagGTTTACGTAAACATTAAAGATGATCAAGCTCATGCAGTGAATACTGCCTGGGCAATGTTAGCTTTAATTTGTGCAGGACAG
cactgat putative branch site (score: 24)
atttttattttttatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagaaatcttatgagggaagaagttggactggtgcaaatttttataaatccatttggaagatttcgtcactgatttttattttttatgataccaaacagGTTTACGTAAACATTAAAGATGATCAAGCTCATGCAGTGAATACTGCCTGGGCAATGTTAGCTTTAATTTGTGCAGGACAG
gaagaaa
- - - - cttatga
- - - - - - - - - - - - - - -ctggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - ccatttg