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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagatagttactggttcatcctcttctatgacagtaaattatctgattgtagttctacctttgaaatgtttaatccatattgtttgtgctcttaatctagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTAGAAATATACCACTACAAGCATCGATGACTGTAACAGACG

Basic information

species Oryza sativa
transcript LOC_Os11g33330.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g33330.1 (Oryza sativa), 3'ss of exon 15
lower sequence: GRMZM2G169095_T01 (Zea mays), 3'ss of exon 13
gtcagatagttactggttcatcctcttctatgacagtaaattatctgattgtagttctacctttgaaatgtttaatccatattgtttgtgctcttaatctagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTAGAAATATACCACTACAAGCATCGATGACTGTAACAGACG
||  |  | | |||| |||  | | |  | |  ||||   | |||| ||||||   || || |  ||     | |  |||    ||  |||| || | | |||||||||||||||||||||||||||||||||| ||||| |||| || |||||||| |||||||| ||||| |
gttcg--aatgactgtttccccttgtattgtctcagt---tcatctaattgtatgactgccctaaaatgaagttactcat----ttcttgctgttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAGCATCAATGACTGTGACAGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58680853|gb|CK069540.1|CK069540
EST:     TCGGCATGGCACAGGCCATGGAATTGGGTCTTATTTGAATGTTCATGAAG                         GTCCTCATCTAATTAGCTTCAGACCTTCTGCTAGAAATGTACCACTA
genomic: TCGGCATGGCACAGGCCATGGAATTGGGTCTTATTTGAATGTTCATGAAGgtcagatagt ... cttaatctagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTAGAAATATACCACTA
EST: gi|38475630|gb|CF959763.1|CF959763
EST:     TCGGCATGGCACAGGCCATGGAATTGGGTCTTATTTGAATGTTCATGAAG                         GTCCTCATCTAATTAGCTTCAGACCTTCTGCTAGAAATGTACCACTACAAG
genomic: TCGGCATGGCACAGGCCATGGAATTGGGTCTTATTTGAATGTTCATGAAGgtcagatagt ... cttaatctagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTAGAAATATACCACTACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtagttctacctttgaaatgtttaatccatattgtttgtgctcttaatctagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTAGAAATATACCACTACAAGCATCGATGACTGTAACAGACG
                                            tcttaat  putative branch site (score: 3)
                                         tgctctt  CT-rich tract
              tttgaaatgtttaat  TA-rich tract