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...ggctatcgttctccatttttttttcatgaactgaaatgtaatgtggagtgatttacatgcatattctgtacactgatcatgtatgatctcatttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGATCCTACAGTACCGGAGAGAGTAAATCTTCCTCTGTATGCTGGACCAGAG
species | Oryza sativa |
transcript | LOC_Os10g37210.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAG GAGCAGCACAAACCATGAGCATGATCAAEST: gi|88245808|gb|CI245657.1|CI245657
genomic: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAGgtaagatatg ... atttatacagGAGCAGCACAAACCATGAGCATGATCAA
EST: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAG GAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGAEST: gi|29615151|gb|CB620164.1|CB620164
genomic: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAGgtaagatatg ... atttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGA
EST: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAG GAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGAEST: gi|88259171|gb|CI363464.1|CI363464
genomic: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAGgtaagatatg ... atttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGA
EST: TTTGACGTACCAACTTCTTTATACAG GAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGAEST: gi|29657656|gb|CB653931.1|CB653931
genomic: TTTGACGTACCAACTTCTTTATACAGgtaagatatg ... atttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGA
EST: CTGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAG GAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGAEST: gi|29675569|gb|CB671844.1|CB671844
genomic: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAGgtaagatatg ... atttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGA
EST: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAG GAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGAEST: gi|29662394|gb|CB658669.1|CB658669
genomic: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAGgtaagatatg ... atttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGA
EST: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAG GAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGAEST: gi|218486085|gb|FG956984.1|FG956984
genomic: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAGgtaagatatg ... atttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGA
EST: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAG GAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGAEST: gi|86889572|gb|CI318763.1|CI318763
genomic: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAGgtaagatatg ... atttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGA
EST: CCGAAACCAGATGGTCAAATATCCTTGGACGTACCAACTTCGTTATACAG GAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCCTTTGAGGGAEST: gi|29637767|gb|CB642776.1|CB642776
genomic: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAGgtaagatatg ... atttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGA
EST: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAG GAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGAEST: gi|86859459|gb|CI278866.1|CI278866
genomic: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAGgtaagatatg ... atttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGA
EST: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAG GAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGAEST: gi|88279088|gb|CI400088.1|CI400088
genomic: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAGgtaagatatg ... atttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGA
EST: TTCTTTATACAG GAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGAEST: gi|29669361|gb|CB665636.1|CB665636
genomic: TTCTTTATACAGgtaagatatg ... atttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGA
EST: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAG GAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGAEST: gi|29667105|gb|CB663380.1|CB663380
genomic: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAGgtaagatatg ... atttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGA
EST: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAG GAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGAEST: gi|29676401|gb|CB672676.1|CB672676
genomic: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAGgtaagatatg ... atttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGA
EST: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAG GAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGAEST: gi|29659147|gb|CB655422.1|CB655422
genomic: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAGgtaagatatg ... atttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGA
EST: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAG GAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGAEST: gi|29681493|gb|CB677768.1|CB677768
genomic: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAGgtaagatatg ... atttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGA
EST: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAG GAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGA
genomic: CCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTTCTTTATACAGgtaagatatg ... atttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGA
gagtgatttacatgcatattctgtacactgatcatgtatgatctcatttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGATCCTACAGTACCGGAGAGAGTAAATCTTCCTCTGTATGCTGGACCAGAG
cactgat putative branch site (score: 30)
tctcattt putative PPT
tcatttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggctatcgttctccatttttttttcatgaactgaaatgtaatgtggagtgatttacatgcatattctgtacactgatcatgtatgatctcatttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGATCCTACAGTACCGGAGAGAGTAAATCTTCCTCTGTATGCTGGACCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - ctccatt
- - - - - - - - - - -tttcatg
- - - - - - - - - - - - - - - - - - tgtaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - -tacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtatg