1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gcaaatcataaggatgttaaaacagttttggaatcactttgttgtaatagatagacctatatgccttcttctctaatttaggaatgtttttatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTGCACTTGACATATTTTCTGAAGGAAAAGGCGTTGTGGCGGCAGCAGTAG
species | Oryza sativa |
transcript | LOC_Os10g33275.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GGGGGTATCTTCATTTCTCTGCACC-AGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|29681907|gb|CB678182.1|CB678182
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|86863896|gb|CI332875.1|CI332875
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|86869375|gb|CI339099.1|CI339099
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|89190185|gb|CI392235.1|CI392235
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATGTTCATTTCTCTGCACC-AGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGAGTCGAGGAGCCEST: gi|88829519|gb|CI074389.1|CI074389
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGA-TCGAGGAGCC
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|88253431|gb|CI352057.1|CI352057
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGCTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|88842850|gb|CI371750.1|CI371750
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|86864475|gb|CI334170.1|CI334170
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|3761879|gb|C99127.1|C99127
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|86887775|gb|CI319725.1|CI319725
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGCGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGCTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|88901940|gb|CI374548.1|CI374548
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|88431984|gb|CI560229.1|CI560229
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|88323608|gb|CI556239.1|CI556239
genomic: GTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|88266175|gb|CI377077.1|CI377077
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|86866355|gb|CI336954.1|CI336954
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|88491998|gb|CI429270.1|CI429270
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|88833760|gb|CI077241.1|CI077241
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|88418465|gb|CI548746.1|CI548746
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|88291326|gb|CI529916.1|CI529916
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGTATTCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGGCCEST: gi|27545909|gb|CA764270.2|CA764270
genomic: GGGGTA-TCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGA-GCC
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|88492016|gb|CI429288.1|CI429288
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|86479957|gb|CI122590.1|CI122590
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|86873082|gb|CI328462.1|CI328462
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGCTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATT-GACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|88286808|gb|CI520118.1|CI520118
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATGTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|88267195|gb|CI379130.1|CI379130
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|88286671|gb|CI517782.1|CI517782
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAGGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|88460605|gb|CI534477.1|CI534477
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|29675438|gb|CB671713.1|CB671713
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTEST: gi|88292148|gb|CI534942.1|CI534942
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCT
EST: ATCATAGAGTTGATCCAG AGATTAAGAGGTGGATTGGACAAACTCCTCCAGAGGAAGATCGANGAGCCTEST: gi|88428949|gb|CI554665.1|CI554665
genomic: ATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|88268000|gb|CI378772.1|CI378772
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGATGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|25803109|gb|CA759070.1|CA759070
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|86833107|gb|CI333706.1|CI333706
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTEST: gi|88264916|gb|CI367567.1|CI367567
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
EST: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAG AGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
genomic: GGGGGTATCTTCATTTCTCTGCACCAAGGCGTATCATAGAGTTGATCCAGgtatctctaa ... tatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCT
aatagatagacctatatgccttcttctctaatttaggaatgtttttatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTGCACTTGACATATTTTCTGAAGGAAAAGGCGTTGTGGCGGCAGCAGTAG
ctctaat putative branch site (score: 10)
tttttattt putative PPT
taatttaggaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaaatcataaggatgttaaaacagttttggaatcactttgttgtaatagatagacctatatgccttcttctctaatttaggaatgtttttatttgacagAGATTAAGAGGTGAATTGGACAAACTCCTCCAGAGGAAGATCGAGGAGCCTGCACTTGACATATTTTCTGAAGGAAAAGGCGTTGTGGCGGCAGCAGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA