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gtggatattttttttatctgtatgaacagtttgtgttatcaattttttttcttaccctgatgtcctgatggatgttttgttgattgtgtcccttatcagGTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCC
species | Oryza sativa |
transcript | LOC_Os09g06499.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CGAATTGATGCACCTATCTACTTTGCCAACATAAGTTACATAAAAGACAG GTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGTEST: gi|29643061|gb|CB648068.1|CB648068
genomic: CGAATTGATGCACCTATCTACTTTGCCAACATAAGTTACATAAAAGACAGgtggatattt ... cccttatcagGTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGT
EST: GGAATTGATGCACCTATCTACTTTGCCAACATAAGTTACATAAAAGACAG GTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGTEST: gi|29614649|gb|CB619662.1|CB619662
genomic: CGAATTGATGCACCTATCTACTTTGCCAACATAAGTTACATAAAAGACAGgtggatattt ... cccttatcagGTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGT
EST: CAACATAAGTTACATAAAAGACAG GTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGTEST: gi|87007390|gb|CI279061.1|CI279061
genomic: CAACATAAGTTACATAAAAGACAGgtggatattt ... cccttatcagGTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGT
EST: GCCAACATAAGTTACATAAAAGACAG GTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGTEST: gi|29661764|gb|CB658039.1|CB658039
genomic: GCCAACATAAGTTACATAAAAGACAGgtggatattt ... cccttatcagGTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGT
EST: CGAATTGATGCACCTATCTACTTTGCCAACATAAGTTACATAAAAGACAG GTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGTEST: gi|29661763|gb|CB658038.1|CB658038
genomic: CGAATTGATGCACCTATCTACTTTGCCAACATAAGTTACATAAAAGACAGgtggatattt ... cccttatcagGTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGT
EST: CGAATTGATGCACCTATCTACTTTGCCAACATAAGTTACATAAAAGACAG GTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGTEST: gi|29674507|gb|CB670782.1|CB670782
genomic: CGAATTGATGCACCTATCTACTTTGCCAACATAAGTTACATAAAAGACAGgtggatattt ... cccttatcagGTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGT
EST: CGAATTGATGCACCTATCTACTTTGCCAACATAAGTTACATAAAAGACAG GTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGTEST: gi|29613615|gb|CB618628.1|CB618628
genomic: CGAATTGATGCACCTATCTACTTTGCCAACATAAGTTACATAAAAGACAGgtggatattt ... cccttatcagGTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGT
EST: TGCCAACATAAGTTACATAAAAGACAG GTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGTEST: gi|86900178|gb|CI300201.1|CI300201
genomic: TGCCAACATAAGTTACATAAAAGACAGgtggatattt ... cccttatcagGTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGT
EST: CGAATTGATGCACCTATCTACTTTGCCAACATAAGTTACATAAAAGACAG GTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGTEST: gi|22304910|gb|BQ906132.1|BQ906132
genomic: CGAATTGATGCACCTATCTACTTTGCCAACATAAGTTACATAAAAGACAGgtggatattt ... cccttatcagGTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGT
EST: ACATAAGTTACATATAAGACAAG GTTGCGTGAATATGAGCTTAATCTCCC-AATTC-AACCGTGGACCTGATGEST: gi|29630278|gb|CB635287.1|CB635287
genomic: ACATAAGTTACATAAAAGAC-AGgtggatattt ... cccttatcagGTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATG
EST: CGAATTGATGCACCTATCTACTTTGCCAACATAAGTTACATAAAAGACAG GTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGT
genomic: CGAATTGATGCACCTATCTACTTTGCCAACATAAGTTACATAAAAGACAGgtggatattt ... cccttatcagGTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGT
ttttttcttaccctgatgtcctgatggatgttttgttgattgtgtcccttatcagGTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCC
tcccttatc CT-rich tract
atgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggatattttttttatctgtatgaacagtttgtgttatcaattttttttcttaccctgatgtcctgatggatgttttgttgattgtgtcccttatcagGTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG