1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtatgctaatgtacttgaaacaagtttgatcattgtactgctagaatttaaaggcttttctgaaagtgcttgccatattagCAGGTCCATATCCAGAATCTCCTCGGCTATCTCGGTTTCCAAACCTTCCTGACATGTCTCCCAAGAAAGTTTCTGCTGCTCATAACGTATATGTTTCACC
species | Oryza sativa |
transcript | LOC_Os08g42600.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GTCTGGTACTAGTCCAAACAAGAAGAATGAGGAAAAATGTGCTGCTGATG CAGGTCCATATCCAGAATCTCCTCGGCTATCTCGGTTTCCAAACCTTCCTGEST: gi|58602114|gb|CK012642.1|CK012642
genomic: GTCTGGTACTAGTCCAAACAAGAAGAATGAGGAAAAATGTGCTGCTGATGgtatgctaat ... gccatattagCAGGTCCATATCCAGAATCTCCTCGGCTATCTCGGTTTCCAAACCTTCCTG
EST: GTCTGGTACTAGTCCAAACAAGAAGAATGAGGAAAAATGTGCTGCTGAT- --GGTCCATATCCAGAATCTCCTCGGCTATCTCGGTTTCCAAACCTTCCTGEST: gi|218484308|gb|FG956791.1|FG956791
genomic: GTCTGGTACTAGTCCAAACAAGAAGAATGAGGAAAAATGTGCTGCTGATGgtatgctaat ... gccatattagCAGGTCCATATCCAGAATCTCCTCGGCTATCTCGGTTTCCAAACCTTCCTG
EST: GTCTGGTACTAGTCCAAACAAGAAGAATGAGGAAAAATGTGCTGCTGATG CAGGTCCATATCCAGAATCTCCTCGGCTATCTCGGTTTCCAAACCTTCCTG
genomic: GTCTGGTACTAGTCCAAACAAGAAGAATGAGGAAAAATGTGCTGCTGATGgtatgctaat ... gccatattagCAGGTCCATATCCAGAATCTCCTCGGCTATCTCGGTTTCCAAACCTTCCTG
tgatcattgtactgctagaatttaaaggcttttctgaaagtgcttgccatattagCAGGTCCATATCCAGAATCTCCTCGGCTATCTCGGTTTCCAAACCTTCCTGACATGTCTCCCAAGAAAGTTTCTGCTGCTCATAACGTATATGTTTCACC
gtttgat putative branch site (score: 5)
tagaatttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctaatgtacttgaaacaagtttgatcattgtactgctagaatttaaaggcttttctgaaagtgcttgccatattagCAGGTCCATATCCAGAATCTCCTCGGCTATCTCGGTTTCCAAACCTTCCTGACATGTCTCCCAAGAAAGTTTCTGCTGCTCATAACGTATATGTTTCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT