1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ggaagatattagtccagtagtaacaacgcctgcaggaagaatgtgcattattgctgcaattctgatgtgctccacgcattgttctctgtaaaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGACATGGACACATCGTCTGCTGACGCCGCCTACAACACCACCAACCCATA
species | Oryza sativa |
transcript | LOC_Os08g36774.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGEST: gi|86497823|gb|CI140456.1|CI140456
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
EST: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGATCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGEST: gi|29642058|gb|CB647065.1|CB647065
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
EST: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGEST: gi|86494816|gb|CI137449.1|CI137449
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
EST: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGEST: gi|88971586|gb|CI388831.1|CI388831
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
EST: ATTTGTTGCTCCAG-TACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATTTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGEST: gi|29633614|gb|CB638623.1|CB638623
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
EST: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGEST: gi|89174515|gb|CI110713.1|CI110713
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
EST: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGAGCTGGGACGCAGAATGAGGAGCTTGGCTTGAATEST: gi|86867747|gb|CI342698.1|CI342698
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGA-GCAGAATGAGGAGCTTGGCTTGAAT
EST: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGEST: gi|88835926|gb|CI371031.1|CI371031
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
EST: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGAGGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATEST: gi|86869122|gb|CI335689.1|CI335689
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAG-CTGGGAGCAGAATGAGGAGCTTGGCTTGAAT
EST: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGEST: gi|88476939|gb|CI414210.1|CI414210
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
EST: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGEST: gi|88225974|gb|CI225890.1|CI225890
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
EST: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGEST: gi|88219195|gb|CI220468.1|CI220468
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
EST: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGEST: gi|88903530|gb|CI089068.1|CI089068
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
EST: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGEST: gi|88501970|gb|CI429476.1|CI429476
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
EST: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGEST: gi|88471384|gb|CI408655.1|CI408655
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
EST: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGEST: gi|89187077|gb|CI047144.1|CI047144
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
EST: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGEST: gi|86426635|gb|CI071732.1|CI071732
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
EST: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGEST: gi|38474287|gb|CF958419.1|CF958419
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
EST: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGEST: gi|29633610|gb|CB638619.1|CB638619
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
EST: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGEST: gi|86825556|gb|CI361736.1|CI361736
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
EST: ATTTTTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCA TTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
genomic: ATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCAgtaagttacc ... aaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATG
cattattgctgcaattctgatgtgctccacgcattgttctctgtaaaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGACATGGACACATCGTCTGCTGACGCCGCCTACAACACCACCAACCCATA
ttctgat putative branch site (score: 5)
tttcc putative PPT
tgtaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaagatattagtccagtagtaacaacgcctgcaggaagaatgtgcattattgctgcaattctgatgtgctccacgcattgttctctgtaaaatttccagTTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGACATGGACACATCGTCTGCTGACGCCGCCTACAACACCACCAACCCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - -gtaacaa
- - - - - - - - - - - - - -gcctgca
- - - - - - - - - - - - - - - - - - - - - gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - -tgctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacgca