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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgatactagactattgttctaaaccactgtgattccctgcaaagtgaaaatctcagcttccgatatttacttgaattgtgtatttgtagGATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAGGTAGACTCTTAAA

Basic information

species Oryza sativa
transcript LOC_Os08g32630.3
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g32630.3 (Oryza sativa), 3'ss of exon 15
lower sequence: GRMZM5G851815_T02 (Zea mays), 3'ss of exon 15
gttgatactagactattgttctaaaccactgtgattccctgcaaagtgaaaatctcagcttccgatatttacttgaattgtgtatttgtagGATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAGGTAGACTCTTAAA
|||| | || |   |||||    |  |  ||| ||  |   || |  ||||  ||   ||| |   | ||| | | | ||   ||||||||||||||||||| ||||||||||| || |||||| |||| ||||||||||||||| ||||||| ||||| |||||||| |||||||||             
gttgctgcttggacattgt----atgcgttgttatatc---cataaagaaatacttgtctttc---actta-tgggactgcacatttgtagGATGTAATACAGTTTGGACCTCTTGTGAAAACTTTGGGGCTAGTAATGATCACTAGACCACAAATTTTACCTTCCATATTTAAGCAG-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29670150|gb|CB666425.1|CB666425
EST:     AAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAG                         GATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTAGTAATGATC
genomic: AAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAGgttgatacta ... gtatttgtagGATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTAGTAATGATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctgcaaagtgaaaatctcagcttccgatatttacttgaattgtgtatttgtagGATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAGGTAGACTCTTAAA
                            atatttacttgaatt  TA-rich tract