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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgatactagactattgttctaaaccactgtgattccctgcaaagtgaaaatctcagcttccgatatttacttgaattgtgtatttgtagGATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTA

Basic information

species Oryza sativa
transcript LOC_Os08g32630.2
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g32630.2 (Oryza sativa), 3'ss of exon 15
lower sequence: GRMZM5G851815_T02 (Zea mays), 3'ss of exon 15
gttgatactagactattgttctaaaccactgtgattccctgcaaagtgaaaatctcagcttccgatatttacttgaattgtgtatttgtagGATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTA---------------------------------------------
|||| | || |   |||||    |  |  ||| ||  |   || |  ||||  ||   ||| |   | ||| | | | ||   ||||||||||||||||||| ||||||||||| || |||||| |||| |||                                             
gttgctgcttggacattgt----atgcgttgttatatc---cataaagaaatacttgtctttc---actta-tgggactgcacatttgtagGATGTAATACAGTTTGGACCTCTTGTGAAAACTTTGGGGCTAGTAATGATCACTAGACCACAAATTTTACCTTCCATATTTAAGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29642655|gb|CB647662.1|CB647662
EST:     AAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAG                         GATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTA
genomic: AAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAGgttgatacta ... gtatttgtagGATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctgcaaagtgaaaatctcagcttccgatatttacttgaattgtgtatttgtagGATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTA
                            atatttacttgaatt  TA-rich tract