1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...aacgaacatgcttccccttcaggctaccatgtctgggctttctgcatcactggttgattgcattgcaaagataaacattccgtaccttgttttcctgcagCGACGTGGTAGAGATGGCAAGCTGTGCACCGCTCTTTGTAAATGACAATGATCGCAG
species | Oryza sativa |
transcript | LOC_Os07g48750.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
atcactggttgattgcattgcaaagataaacattccgtaccttgttttcctgcagCGACGTGGTAGAGATGGCAAGCTGTGCACCGCTCTTTGTAAATGACAATGATCGCAG
ggttgat putative branch site (score: 4)
taccttgttttcct putative PPT
aaagataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacgaacatgcttccccttcaggctaccatgtctgggctttctgcatcactggttgattgcattgcaaagataaacattccgtaccttgttttcctgcagCGACGTGGTAGAGATGGCAAGCTGTGCACCGCTCTTTGTAAATGACAATGATCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
-acgaaca
- - - - tgcttcc
- - - - - - - -ccttcag
- - - - - - - - - - - - - ccatgtc
- - - - - - - - - - - - - - - - - - - tttctgc
- - - - - - - - - - - - - - - - - - - - - - - - -ctggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattccg