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gttagtaatctaaacttgtctaatctgtgtaagaaaatgtttctaacttttgcttgttgcagGATGCAGACAAGAAAGGACTTGGTATGATTGCGGAGGAGGTGAAGCAGTTGGCTCAAAGAGCAAGGGATAACAGTTTGAAACCAGATGATTATGAG
species | Oryza sativa |
transcript | LOC_Os07g22720.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TCAATGTTGCTGTACAGACTGAGCATGGACTGTTTGTTCCAGTAATCAGG GATGCAGACAAGAAAGGACTTGGTATGATTGCGGAGGAGGTGAAGCAGTTGEST: gi|58680453|gb|CK069140.1|CK069140
genomic: TCAATGTTGCTGTACAGACTGAGCATGGACTGTTTGTTCCAGTAATCAGGgttagtaatc ... cttgttgcagGATGCAGACAAGAAAGGACTTGGTATGATTGCGGAGGAGGTGAAGCAGTTG
EST: TCAATGTTGCTGTACAGACTGAGCATGGACTGTTTGTTCCAGTAATCAGG GATGCAGACAAGAAAGGACTTGGTATGATTGCGGAGGAGGTGAAGCAGTTGEST: gi|55410697|gb|CV723073.1|CV723073
genomic: TCAATGTTGCTGTACAGACTGAGCATGGACTGTTTGTTCCAGTAATCAGGgttagtaatc ... cttgttgcagGATGCAGACAAGAAAGGACTTGGTATGATTGCGGAGGAGGTGAAGCAGTTG
EST: TCAATGTTGCTGTACAGACTGAGCATGGACTGTTTGTTCCAGTAATCAGG GATGCAGACAAGAAAGGACTTGGTATGATTGCGGAGGAGGTG
genomic: TCAATGTTGCTGTACAGACTGAGCATGGACTGTTTGTTCCAGTAATCAGGgttagtaatc ... cttgttgcagGATGCAGACAAGAAAGGACTTGGTATGATTGCGGAGGAGGTG
atctaaacttgtctaatctgtgtaagaaaatgtttctaacttttgcttgttgcagGATGCAGACAAGAAAGGACTTGGTATGATTGCGGAGGAGGTGAAGCAGTTGGCTCAAAGAGCAAGGGATAACAGTTTGAAACCAGATGATTATGAG
ttctaac putative branch site (score: 39)
cttttgctt CT-rich tract
taagaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtaatctaaacttgtctaatctgtgtaagaaaatgtttctaacttttgcttgttgcagGATGCAGACAAGAAAGGACTTGGTATGATTGCGGAGGAGGTGAAGCAGTTGGCTCAAAGAGCAAGGGATAACAGTTTGAAACCAGATGATTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG