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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccccttgttctatttttgttgcttgtttggataatcaacttattcatctctcagacaaatggctcctccagGATTACACTCCGTATTCATGTCAAAAGATTATCTCTGCAACACCTGGTGTTGGTGATCACCATGGTTGCCCTTATCGACATTTTGG

Basic information

species Oryza sativa
transcript LOC_Os07g22400.2
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g22400.2 (Oryza sativa), 3'ss of exon 15
lower sequence: GRMZM2G044317_T03 (Zea mays), 3'ss of exon 15
gtaagccccttgttctatttttgttgcttgtttggataatcaacttattcatctctcagacaaatggctcctccagGATTACACTCCGTATTCATGTCAAAAGATTATCTCTGCAACACCTGGTGTTGGTGATCACCATGGTTGCCCTTATCGACATTTTGG--------------
||||| | |     ||   | |||  ||||      |     |  ||||  |  |||  ||| ||| || ||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||| ||||||||||| || || | ||||||||||||              
gtaagtctc-----ctccatgtgtaacttgaaattgtgccacaagtattacttactctcacacatg-ctgctccagGATTACACTCCATATTCATGTCAAAAGATCATTTCTGCAACACCTGGCGTTGGAGATCACCATGGATGTCCGTTTCGACATTTTGGGTACAATTTGACCC

upper sequence: LOC_Os07g22400.2 (Oryza sativa), 3'ss of exon 15
lower sequence: GRMZM2G044317_T02 (Zea mays), 3'ss of exon 15
gtaagccccttgttctatttttgttgcttgtttggataatcaacttattcatctctcagacaaatggctcctccagGATTACACTCCGTATTCATGTCAAAAGATTATCTCTGCAACACCTGGTGTTGGTGATCACCATGGTTGCCCTTATCGACATTTTGG
||||| | |     ||   | |||  ||||      |     |  ||||  |  |||  ||| ||| || ||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||| ||||||||||| || || | ||||||||||||
gtaagtctc-----ctccatgtgtaacttgaaattgtgccacaagtattacttactctcacacatg-ctgctccagGATTACACTCCATATTCATGTCAAAAGATCATTTCTGCAACACCTGGCGTTGGAGATCACCATGGATGTCCGTTTCGACATTTTGG

upper sequence: LOC_Os07g22400.2 (Oryza sativa), 3'ss of exon 15
lower sequence: GLYMA08G11130.1 (Glycine max), 3'ss of exon 15
------------------------------------------------------------------------------------------gtaagccccttgttct---atttttgttgcttgtttgg-ataatcaacttattcatctctcagacaaatggctcctccagGATTACACTCCGTATTCATGTCAAAAGATTATCTCTGCAACACCTGGTGTTGGTGATCACCATGGTTGCCCTTATCGACATTTTGG
                                                                                            ||   |  |||| |   ||   |  ||| ||  |   || || |  ||   ||  |   |     |||| |  | ||||| |||||||| ||||| |||||||||||||| ||  |||| ||||| | ||| ||||| |||||||||||||||||| ||||  |
gtaagttttgaatttcccccactgatttatgagatgttttaaatatatttctgttactgatttctattttgaaactaggctttgaaacacaaaatttcaatgtttttgtatgcataatgcatgcatattatgatgagtttcaacaagtaatattttgatggatgttacagGACTACACTCCCTATTCTTGTCAAAAGATTATTTCATCAACTCCTGGAGCTGGAGATCATCATGGTTGCCCTTATCGAAATTTCAG

upper sequence: LOC_Os07g22400.2 (Oryza sativa), 3'ss of exon 15
lower sequence: GLYMA05G28150.1 (Glycine max), 3'ss of exon 15
----------------------------------------------------------------------------gtaagccccttgttct---atttttgttgcttgtttg-gataatcaacttattcatctctcagacaaatggctcctccagGATTACACTCCGTATTCATGTCAAAAGATTATCTCTGCAACACCTGGTGTTGGTGATCACCATGGTTGCCCTTATCGACATTTTGG
                                                                              ||   |  |||| |   ||   |  ||| ||| |  ||| || |  ||   ||  |   |     |||| |  | |||||||| ||||| ||||| |||||||||||||| ||  |||| ||||| | ||| ||||| ||||||||||| |||||||||||  |
gtaagttctgaatttccccactgatttatgggatgtttcaaatatatttctgttgctgatttccattttgaaacacaaaatttcaatgtttttgtatgcataatgcatgtatatgatgatgagtttcaacaagtaatattttgatggatgttacagGATTATACTCCCTATTCTTGTCAAAAGATTATTTCATCAACTCCTGGAGCTGGGGATCATCATGGTTGCCCCTATCGACATTTCAG

upper sequence: LOC_Os07g22400.2 (Oryza sativa), 3'ss of exon 15
lower sequence: Vv05s0051g00930.t01 (Vitis vinifera), 3'ss of exon 15
---------------gtaagccccttgttctat--ttttgttgcttgtttggataatcaacttattcatctctcagacaaat--ggctcctcc-----agGATTACACTCCGTATTCATGTCAAAAGATTATCTCTGCAACACCTGGTGTTGGTGATCACCATGGTTGCCCTTATCGACATTTTGG
                 |||  | |     ||   | |   | | | | ||   |   ||   |   |  |   | |||  |  |  |  |||     |||||||||| || ||||| |||||||| ||||| ||  |||| |||||||| || ||||| || ||||||||||||||||||||| |
ctcacctttttacttaaaagtgcttaaaaataagatatgacttcctatatgtgcatgtaaaccaacaacattcaaaacatttttgttttttcctttgcagGATTACACACCTTATTCTTGTCAAAAAATTATTTCATCAACTCCTGGTGTAGGCGATCATCACGGTTGCCCTTATCGACATTTTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgcttgtttggataatcaacttattcatctctcagacaaatggctcctccagGATTACACTCCGTATTCATGTCAAAAGATTATCTCTGCAACACCTGGTGTTGGTGATCACCATGGTTGCCCTTATCGACATTTTGG
                                              ctcctcc  CT-rich tract
              ataatcaacttatt  TA-rich tract