1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...aatacgggcagctgctttattcatttcagctgagagttgttatggttttaatgttgacatactgtcgttgacccatcttgatgatatttgacacttgcagGTCCTACTTGGGGATAGTCCTGTTTATGATACAGATGCAACTGAACCATCAGAGGAGGGCATACAGACTGTCTTACAAGTCCTGAGTATCCAGCAGCAAT
species | Oryza sativa |
transcript | LOC_Os07g06980.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AAACAATCTTCGGTCTAAATCCTCATCAGCTACTGAAGTTGTTAAG GTCCTACTTGGGGATAGTCCTGTTTATGATACAGATGCAACTGAACCATCAEST: gi|58586909|gb|CF985217.1|CF985217
genomic: ATACAATCTTCGGTCTATATCCTCATCAGCTACTGAAGTTGTTAAGgtatgcattc ... acacttgcagGTCCTACTTGGGGATAGTCCTGTTTATGATACAGATGCAACTGAACCATCA
EST: ATACAATCTTCGGTCTATATCCTCATCAGCTACTGAAGTTGTTAAG GTCCTACTTGGGGATAGTCCTGTTTATGATACAGATGCAACTGAACCATCAEST: gi|58681037|gb|CK069724.1|CK069724
genomic: ATACAATCTTCGGTCTATATCCTCATCAGCTACTGAAGTTGTTAAGgtatgcattc ... acacttgcagGTCCTACTTGGGGATAGTCCTGTTTATGATACAGATGCAACTGAACCATCA
EST: ATCCTCATCAGCTACTGAAGTTGTTAAG GTCCTACTTGGGGATAGTCCTGTTTATGATACAGATGCAACTGAACCATCAEST: gi|58681336|gb|CK070023.1|CK070023
genomic: ATCCTCATCAGCTACTGAAGTTGTTAAGgtatgcattc ... acacttgcagGTCCTACTTGGGGATAGTCCTGTTTATGATACAGATGCAACTGAACCATCA
EST: ATACAATCTTCGGTCTATATCCTCATCAGCTACTGAAGTTGTTAAG GTCCTACTTGGGGATAGTCCTGTTTATGATACAGATGCAACTGAACCATCAEST: gi|29644494|gb|CB649501.1|CB649501
genomic: ATACAATCTTCGGTCTATATCCTCATCAGCTACTGAAGTTGTTAAGgtatgcattc ... acacttgcagGTCCTACTTGGGGATAGTCCTGTTTATGATACAGATGCAACTGAACCATCA
EST: ATACAATCTTCGGTCTATATCCTCATCAGCTACTGAAGTTGTTAAG GTCCTACTTGGGGATAGTCCTGTTTATGATACAGATGCAACTGAACCATCA
genomic: ATACAATCTTCGGTCTATATCCTCATCAGCTACTGAAGTTGTTAAGgtatgcattc ... acacttgcagGTCCTACTTGGGGATAGTCCTGTTTATGATACAGATGCAACTGAACCATCA
ttttaatgttgacatactgtcgttgacccatcttgatgatatttgacacttgcagGTCCTACTTGGGGATAGTCCTGTTTATGATACAGATGCAACTGAACCATCAGAGGAGGGCATACAGACTGTCTTACAAGTCCTGAGTATCCAGCAGCAAT
atgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatacgggcagctgctttattcatttcagctgagagttgttatggttttaatgttgacatactgtcgttgacccatcttgatgatatttgacacttgcagGTCCTACTTGGGGATAGTCCTGTTTATGATACAGATGCAACTGAACCATCAGAGGAGGGCATACAGACTGTCTTACAAGTCCTGAGTATCCAGCAGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - gctgctt
- - - - - - - - - - - - - cagctga
- - - - - - - - - - - - - - - - - - -tgttatg
- - - - - - - - - - - - - - - - - - - - - - - - - atgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -catactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgata