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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttagtcgtttttgcctgatcgaaaactgcatttttttttgtgactctgagactaattctttgttaactcattgacagTGCTTGGTTCTGGCCATGGAATGCAGCCGCAGCGCTCAGCATGGATAAGCATCACTACCTTGTATTCATTCTGTAGATACAACTCATTGTACAGGAACTA

Basic information

species Oryza sativa
transcript LOC_Os06g49990.3
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88384956|gb|CI559224.1|CI559224
EST:     CTGCATTAATGGTTAGACAGTGCTGCTACTCCAAATGGGACTCTAGAAAG                         TGCTTGGTTCTGGCCATGGAATGCAGCCGCAGCGCTCAGCATGGATAAGCA
genomic: CTGCATTAATGGTTAGACAGTGCTGCTACTCCAAATGGGACTCTAGAAAGgtatttagtc ... tcattgacagTGCTTGGTTCTGGCCATGGAATGCAGCCGCAGCGCTCAGCATGGATAAGCA
EST: gi|88445930|gb|CI549653.1|CI549653
EST:     CTGCATTAATGGTTAGACAGTGCTGCTACTCCAAATGGGACTCTAGAAAG                         TGCTTGGTTCTGGCCATGGAATGCAGCCGCAGCGCTCAGCATGGATAAGCA
genomic: CTGCATTAATGGTTAGACAGTGCTGCTACTCCAAATGGGACTCTAGAAAGgtatttagtc ... tcattgacagTGCTTGGTTCTGGCCATGGAATGCAGCCGCAGCGCTCAGCATGGATAAGCA
EST: gi|313080000|gb|HO213320.1|HO213320
EST:     CTGCATTAATGGTTAGACAGTGCTGCTACTCCAAATGGGACTCTAGAAAG                         TGCTTGGTTCTGGCCATGGAATGCAGCCGCAGCGCTCAGCATGGATAAGCA
genomic: CTGCATTAATGGTTAGACAGTGCTGCTACTCCAAATGGGACTCTAGAAAGgtatttagtc ... tcattgacagTGCTTGGTTCTGGCCATGGAATGCAGCCGCAGCGCTCAGCATGGATAAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaactgcatttttttttgtgactctgagactaattctttgttaactcattgacagTGCTTGGTTCTGGCCATGGAATGCAGCCGCAGCGCTCAGCATGGATAAGCATCACTACCTTGTATTCATTCTGTAGATACAACTCATTGTACAGGAACTA
                                      tgttaac  putative branch site (score: 2)
       atttttttttgtga  TA-rich tract