1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...ctcacccctcttgataaattttgatatgagaatctttcctctcatatccagtgtttttttattattagtgacaggctgacagcatactgttatctttcagGAAGTTGAAGTATGAGGAGACTGTTGCCAATATATGGCCAAAATTCGGAACTAACAAAAAAGAGCTAATAAAG
species | Oryza sativa |
transcript | LOC_Os06g48770.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GTGACAAAGGGTATCACTGCTGGCATGGTGCATTGGCTTGTTGACAAAGG GAAGTTGAAGTATGAGGAGACTGTTGCCAATATATGGCCAAAATTCGGAACEST: gi|58590136|gb|CF988444.1|CF988444
genomic: GTGACAAAGGGTATCACTGCTGGCATGGTGCATTGGCTTGTTGACAAAGGgtgagtgctt ... tatctttcagGAAGTTGAAGTATGAGGAGACTGTTGCCAATATATGGCCAAAATTCGGAAC
EST: GTGACAAAGGGTATCACTGCTGGCATGGTGCATTGGCTTGTTGACAAAGG GAAGTTGAAGTATGAGGAGACTGTTGCCAATATATGGCCAAAATTCGGAACEST: gi|87005733|gb|CI316152.1|CI316152
genomic: GTGACAAAGGGTATCACTGCTGGCATGGTGCATTGGCTTGTTGACAAAGGgtgagtgctt ... tatctttcagGAAGTTGAAGTATGAGGAGACTGTTGCCAATATATGGCCAAAATTCGGAAC
EST: GTGACAAAGGGTATCACTGCTGGCATGGTGCATTGGCTTGTTGACAAAGG GAAGTTGAAGTATGAGGAGACTGTTGCCAATATATGGCCAAAATTCGGAACEST: gi|58605848|gb|CK033881.1|CK033881
genomic: GTGACAAAGGGTATCACTGCTGGCATGGTGCATTGGCTTGTTGACAAAGGgtgagtgctt ... tatctttcagGAAGTTGAAGTATGAGGAGACTGTTGCCAATATATGGCCAAAATTCGGAAC
EST: GTGACAAAGGGTATCACTGCTGGCATGGTGCATTGGCTTGTTGACAAAGG GAAGTTGAAGTATGAGGAGACTGTTGCCAATATATGGCCAAAATTCGGAAC
genomic: GTGACAAAGGGTATCACTGCTGGCATGGTGCATTGGCTTGTTGACAAAGGgtgagtgctt ... tatctttcagGAAGTTGAAGTATGAGGAGACTGTTGCCAATATATGGCCAAAATTCGGAAC
atccagtgtttttttattattagtgacaggctgacagcatactgttatctttcagGAAGTTGAAGTATGAGGAGACTGTTGCCAATATATGGCCAAAATTCGGAACTAACAAAAAAGAGCTAATAAAG
ggctgac putative branch site (score: 3)
ttatctttc putative PPT
tgtttttttattatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcacccctcttgataaattttgatatgagaatctttcctctcatatccagtgtttttttattattagtgacaggctgacagcatactgttatctttcagGAAGTTGAAGTATGAGGAGACTGTTGCCAATATATGGCCAAAATTCGGAACTAACAAAAAAGAGCTAATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caggctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcatac