1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ggcatttcatgatctctaaatacaaaatgctgctcaccatgtatctgcgtcatttgttttgctcatgttcatgtattgatgaatttcttgtgctatgcagACTCCGTACCAGACAAAACTGATAGACACCACCTTACTTACCCCTGCTGAGATTGAATGGGTAAATGCGTATCACTCGGATTGCAGAAAAATTTTGCAAC
species | Oryza sativa |
transcript | LOC_Os06g45360.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AATTTAATTTTGGAGATAAGGGTTATTTGACTTTTGAACATATAACATGG ACTCCGTACCAGACTAAACTGATAGACACCACCTTACTTACCCCTGCTGAGEST: gi|88481177|gb|CI418448.1|CI418448
genomic: AATTTAATTTTGGAGATAAGGGTTATTTGGCTTTTGAACATATAACATGGgtaagtttct ... tgctatgcagACTCCGTACCAGACAAAACTGATAGACACCACCTTACTTACCCCTGCTGAG
EST: AATTTAATTTTGGAGATAAGGGTTATTTGGCTTTTGAACATATAACATGG ACTCCGTACCAGACAAAACTGATAGACACCACCTTACTTACCCCTGCTGAGEST: gi|89176729|gb|CI111445.1|CI111445
genomic: AATTTAATTTTGGAGATAAGGGTTATTTGGCTTTTGAACATATAACATGGgtaagtttct ... tgctatgcagACTCCGTACCAGACAAAACTGATAGACACCACCTTACTTACCCCTGCTGAG
EST: AATTTAATTTTGGAGATAAGGGTTATTTGGCTTTTGAACATATAACATGG ACTCCGTACCAGGCCAAACTGATAGACACCACCTTACTTACCCCTGCTGAGEST: gi|88514021|gb|CI441527.1|CI441527
genomic: AATTTAATTTTGGAGATAAGGGTTATTTGGCTTTTGAACATATAACATGGgtaagtttct ... tgctatgcagACTCCGTACCAGACAAAACTGATAGACACCACCTTACTTACCCCTGCTGAG
EST: AATTTAATTTTGGAGATAAGGGTTATTTGGCTTTTGNACATATAACATGG ACTCCGTACCAGACCAAACTGATAGACACCACCTTACTTACCCCTGCTGAG
genomic: AATTTAATTTTGGAGATAAGGGTTATTTGGCTTTTGAACATATAACATGGgtaagtttct ... tgctatgcagACTCCGTACCAGACAAAACTGATAGACACCACCTTACTTACCCCTGCTGAG
tgcgtcatttgttttgctcatgttcatgtattgatgaatttcttgtgctatgcagACTCCGTACCAGACAAAACTGATAGACACCACCTTACTTACCCCTGCTGAGATTGAATGGGTAAATGCGTATCACTCGGATTGCAGAAAAATTTTGCAAC
tattgat putative branch site (score: 1)
tttcttgt putative PPT
atttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcatttcatgatctctaaatacaaaatgctgctcaccatgtatctgcgtcatttgttttgctcatgttcatgtattgatgaatttcttgtgctatgcagACTCCGTACCAGACAAAACTGATAGACACCACCTTACTTACCCCTGCTGAGATTGAATGGGTAAATGCGTATCACTCGGATTGCAGAAAAATTTTGCAAC
- - tttcatg
- - - - - - - - - - tacaaaa
- - - - - - - - - - - - - -tgctgct
- - - - - - - - - - - - - - - - - - -catgtat
- - - - - - - - - - - - - - - - - - - - - - ctgcgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcttg