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gtaatttcttttatctttgttgcccctagtactgctaatatttcaggtgaaccatttacgcggatccattaaacgatatatcattattactattgccagGATTCCTTTAGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACACAG
species | Oryza sativa |
transcript | LOC_Os06g10280.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TTTCTTCCTTTCCCTATTGCAAATGCTCTCACAGCAAAGATCAATGCTGG GATTCCTTTAGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACACEST: gi|86435856|gb|CI107089.1|CI107089
genomic: TTTCTTCCTTTCGCTATTGCAAATGCTCTCACAGCAAAGATCAATGCTGGgtaatttctt ... ctattgccagGATTCCTTTAGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACAC
EST: TTTCTTCCTTTCGCTATTGCAAATGCTCTCACAGCAAAGATCAATGCTGG GATTCCTTTAGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACACEST: gi|86869993|gb|CI317914.1|CI317914
genomic: TTTCTTCCTTTCGCTATTGCAAATGCTCTCACAGCAAAGATCAATGCTGGgtaatttctt ... ctattgccagGATTCCTTTAGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACAC
EST: TTCTTCCTTTCCCTATTGCAAAGGCTCTCACACCAAAGATCAATGCT-G GATTCCTTTATTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCGTACACEST: gi|38483180|gb|CF966982.1|CF966982
genomic: TTCTTCCTTTCGCTATTGCAAATGCTCTCACAGCAAAGATCAATGCTGGgtaatttctt ... ctattgccagGATTCCTTTAGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACAC
EST: TTTCTTCCTTTCGCTATTGCAAATGCTCTCACAGCAAAGATCAATGCTGG GATTCCTTTAGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACAC
genomic: TTTCTTCCTTTCGCTATTGCAAATGCTCTCACAGCAAAGATCAATGCTGGgtaatttctt ... ctattgccagGATTCCTTTAGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACAC
aggtgaaccatttacgcggatccattaaacgatatatcattattactattgccagGATTCCTTTAGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACACAG
attaaacgatatatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttcttttatctttgttgcccctagtactgctaatatttcaggtgaaccatttacgcggatccattaaacgatatatcattattactattgccagGATTCCTTTAGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT