1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tgagcggagaacttttggttaatctagctggatgaaaacttaatatgcacctcttttatcatgtaaaactgtactgatgattatttttcttgtctggcagTGACGATGTAACTTTTGCCCTGAAGGAATCCCCAGATATTCCATGGTTGTCCAAGTACCTGTGAAGTTTACACTTGCAGCGGTTGTACTTTCCCAGCATT
species | Oryza sativa |
transcript | LOC_Os06g08790.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GAGGAAGGCACTAAGCACAAGTTGCAGAAGCTTCAGCTTAACTATCCAAG TGACGATGTAACTTTTGGCCCTGAAGGAATCCCCAGATATTCCATGGTTGTEST: gi|88270340|gb|CI385598.1|CI385598
genomic: GAGGAAGGCACTAAGCACAAGTTGCAGAAGCTTCAGCTTAACTATCCAAGgttagcttgc ... tgtctggcagTGACGATGTAACTTTT-GCCCTGAAGGAATCCCCAGATATTCCATGGTTGT
EST: GAGGAAGGCACTAAGCACAAGTTGCAGAAGCTTCAGCTTAACTATCCAAG TGACGATGTAACTTTTGCCCTGAAGGAATCCCCAGATATTCCATGGTTGTCEST: gi|163928504|gb|EG711389.1|EG711389
genomic: GAGGAAGGCACTAAGCACAAGTTGCAGAAGCTTCAGCTTAACTATCCAAGgttagcttgc ... tgtctggcagTGACGATGTAACTTTTGCCCTGAAGGAATCCCCAGATATTCCATGGTTGTC
EST: GAGGAAGGCACTAAGCACAAGTTGCAGAAGCTTCAGCTTAACTATCCAAG TGACGATGTAACTTTTGCCCTGAAGGAATCCCCAGATATTCCATGGTTGTCEST: gi|88295362|gb|CI527725.1|CI527725
genomic: GAGGAAGGCACTAAGCACAAGTTGCAGAAGCTTCAGCTTAACTATCCAAGgttagcttgc ... tgtctggcagTGACGATGTAACTTTTGCCCTGAAGGAATCCCCAGATATTCCATGGTTGTC
EST: CAGAAGCTTCAGCTTAACTATCCAAG TGACGATGTAACTTTTGCCCTGAAGGAATCCCCAGATATTCCATGGTTGTC
genomic: CAGAAGCTTCAGCTTAACTATCCAAGgttagcttgc ... tgtctggcagTGACGATGTAACTTTTGCCCTGAAGGAATCCCCAGATATTCCATGGTTGTC
tgcacctcttttatcatgtaaaactgtactgatgattatttttcttgtctggcagTGACGATGTAACTTTTGCCCTGAAGGAATCCCCAGATATTCCATGGTTGTCCAAGTACCTGTGAAGTTTACACTTGCAGCGGTTGTACTTTCCCAGCATT
tactgat putative branch site (score: 6)
ttatttttcttgtct putative PPT
ttttatcatgtaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagcggagaacttttggttaatctagctggatgaaaacttaatatgcacctcttttatcatgtaaaactgtactgatgattatttttcttgtctggcagTGACGATGTAACTTTTGCCCTGAAGGAATCCCCAGATATTCCATGGTTGTCCAAGTACCTGTGAAGTTTACACTTGCAGCGGTTGTACTTTCCCAGCATT
- - - - - - - - - - - - - -ctggatg
- - - - - - - - - - - - - - - - - - - - - atatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatga