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...ccttgttttattaaaacccagtgccgtcatggctcataaatttgtagcggttgatacatttcattttgcctatagtgataagcatcactttatcctgcagGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGC
species | Oryza sativa |
transcript | LOC_Os06g02620.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GTCAAGCCTGGTACTCAGCCTGGCCAAAAGGTGGTTCTGAGAGGAAAAG GAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAEST: gi|86525359|gb|CI165565.1|CI165565
genomic: GTCAAGCCTGGTACTCAGCCTGGCCAAAAGGTGGTTCTGAGAGGAAAAGgtaaactgca ... tatcctgcagGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCA
EST: GTCAAGCCTGGTACTCAGCCTGGCCAAAAGGTGTTTCTGAGAGGAAAAG GAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAEST: gi|218486942|gb|FG960669.1|FG960669
genomic: GTCAAGCCTGGTACTCAGCCTGGCCAAAAGGTGGTTCTGAGAGGAAAAGgtaaactgca ... tatcctgcagGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCA
EST: GGTCAAGCCTGGTACTCAGCCTGGCCAAAAGGTGGTTCTGAGAGGAAAAG GAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAEST: gi|38477689|gb|CF961822.1|CF961822
genomic: GGTCAAGCCTGGTACTCAGCCTGGCCAAAAGGTGGTTCTGAGAGGAAAAGgtaaactgca ... tatcctgcagGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCA
EST: GTCAAGCCTGGTACTCAGCCTGGCCAAAAGGTGGTTCTGAGAGGAAAAG GAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAEST: gi|88832398|gb|CI019339.1|CI019339
genomic: GTCAAGCCTGGTACTCAGCCTGGCCAAAAGGTGGTTCTGAGAGGAAAAGgtaaactgca ... tatcctgcagGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCA
EST: GTCAAGCCTGGTACTCAGCCTGGCCAAAAGGTGGTTCTGAGAGGAAAAG GAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAEST: gi|109712340|gb|CI104948.1|CI104948
genomic: GTCAAGCCTGGTACTCAGCCTGGCCAAAAGGTGGTTCTGAGAGGAAAAGgtaaactgca ... tatcctgcagGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCA
EST: GGCCAAAAGGTGGTTCTGAGAGGAAAAG GAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAEST: gi|88224010|gb|CI223859.1|CI223859
genomic: GGCCAAAAGGTGGTTCTGAGAGGAAAAGgtaaactgca ... tatcctgcagGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCA
EST: TCAGCCTGGCCTAAAGGTGGTTCTGAGAGGAAAAG GAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAEST: gi|29614537|gb|CB619550.1|CB619550
genomic: TCAGCCTGGCCAAAAGGTGGTTCTGAGAGGAAAAGgtaaactgca ... tatcctgcagGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCA
EST: GTCAAGCCTGGTACTCAGCCTGGCCAAAAGGTGGTTTTGAGAGGAAAAG GAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAEST: gi|87018983|gb|CI256868.1|CI256868
genomic: GTCAAGCCTGGTACTCAGCCTGGCCAAAAGGTGGTTCTGAGAGGAAAAGgtaaactgca ... tatcctgcagGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCA
EST: GTCAAGCCTGGTACTCAGCCTGGCCAAAAGGTGGTTCTGAGAGGAAAAG GAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAEST: gi|22304698|gb|BQ905920.1|BQ905920
genomic: GTCAAGCCTGGTACTCAGCCTGGCCAAAAGGTGGTTCTGAGAGGAAAAGgtaaactgca ... tatcctgcagGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCA
EST: GTCAAGCCTGGTACTCAGCCTGGCCAAAAGGTGGTTCTGAGAGGAAAAG GAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAEST: gi|88907776|gb|CI091174.1|CI091174
genomic: GTCAAGCCTGGTACTCAGCCTGGCCAAAAGGTGGTTCTGAGAGGAAAAGgtaaactgca ... tatcctgcagGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCA
EST: AGCCTGGTACTCAGCCTGGCCAAAAGGTGGTTCTGAGAGGAAAAG GAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAEST: gi|86488478|gb|CI131111.1|CI131111
genomic: AGCCTGGTACTCAGCCTGGCCAAAAGGTGGTTCTGAGAGGAAAAGgtaaactgca ... tatcctgcagGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCA
EST: TGGTACTCAGCCTGGCCAAAAGGTGGTTCTGAGAGGAAAAG GAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCA
genomic: TGGTACTCAGCCTGGCCAAAAGGTGGTTCTGAGAGGAAAAGgtaaactgca ... tatcctgcagGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCA
agcggttgatacatttcattttgcctatagtgataagcatcactttatcctgcagGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGC
ggttgat putative branch site (score: 5)
ctttatcct putative PPT
atacatttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttgttttattaaaacccagtgccgtcatggctcataaatttgtagcggttgatacatttcattttgcctatagtgataagcatcactttatcctgcagGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - -aaaccca
- - - - - - - - - - - - - -catggct
- - - - - - - - - - - - - - - - - - - - - - - gcggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatcac