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gtatgttcttgacctcacttctcttttaaaaaaacaggtagctacttctattgacatatgctttctattcatttcagGTTTCATATTTGCTCTGTGCTCTTGGAGATGGTCATCTGTTCAGTTTTCTGTTGAATGCAAGTACGGGTGAATTAACTGATAGAAAGAAGGTTTCTCTTG
species | Oryza sativa |
transcript | LOC_Os05g51480.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TAGGTGGAGAAATTGTTCCTCGGTCTGTTCTGCTTTGTACCTTGGAAGGG GTTTCATATTTGCTCTGTGCTCTTGGAGATGGTCATCTGTTCAGTTTTCTGEST: gi|58691637|gb|CK080324.1|CK080324
genomic: TAGGTGGAGAAATTGTTCCTCGGTCTGTTCTGCTTTGTACCTTGGAAGGGgtatgttctt ... ttcatttcagGTTTCATATTTGCTCTGTGCTCTTGGAGATGGTCATCTGTTCAGTTTTCTG
EST: CTCGGTCTG-TCTGCTTTGTACC-TGGAAGGG GTTTCATATTTGCTCTGTGCTCTTGGAGATGGTCATCTGTTCAGTTTTCTGEST: gi|58695351|gb|CK084038.1|CK084038
genomic: CTCGGTCTGTTCTGCTTTGTACCTTGGAAGGGgtatgttctt ... ttcatttcagGTTTCATATTTGCTCTGTGCTCTTGGAGATGGTCATCTGTTCAGTTTTCTG
EST: TAGGTGGAGAAATTGTTCCTCGGTCTGTTCTGCTTTGTACCTTGGAAGGG GTTTCATATTTGCTCTGTGCTCTTGGAGATGGTCATCTGTTCAGTTTTCTGEST: gi|29630334|gb|CB635343.1|CB635343
genomic: TAGGTGGAGAAATTGTTCCTCGGTCTGTTCTGCTTTGTACCTTGGAAGGGgtatgttctt ... ttcatttcagGTTTCATATTTGCTCTGTGCTCTTGGAGATGGTCATCTGTTCAGTTTTCTG
EST: TAGGTGGAGAAATTGTTCCTCGGTCTGTTCTGCTTTGTACCTTGGAAGGG GTTTCATATTTGCTCTGTGCTCTTGGAGATGGTCATCTGTTCAGTTTTCTGEST: gi|58592127|gb|CF990435.1|CF990435
genomic: TAGGTGGAGAAATTGTTCCTCGGTCTGTTCTGCTTTGTACCTTGGAAGGGgtatgttctt ... ttcatttcagGTTTCATATTTGCTCTGTGCTCTTGGAGATGGTCATCTGTTCAGTTTTCTG
EST: GGAGAAATTGTTCCTCGGTCTGTTCTGCTTTGTACCTTGGAAGGG GTTTCATATTTGCTCTGTGCGCTTGGAGATGGTCATCTGTTCAGTTTTCTG
genomic: GGAGAAATTGTTCCTCGGTCTGTTCTGCTTTGTACCTTGGAAGGGgtatgttctt ... ttcatttcagGTTTCATATTTGCTCTGTGCTCTTGGAGATGGTCATCTGTTCAGTTTTCTG
cttttaaaaaaacaggtagctacttctattgacatatgctttctattcatttcagGTTTCATATTTGCTCTGTGCTCTTGGAGATGGTCATCTGTTCAGTTTTCTGTTGAATGCAAGTACGGGTGAATTAACTGATAGAAAGAAGGTTTCTCTTG
tattgac putative branch site (score: 2)
ctttctattcatttc putative PPT
aaaaaaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttcttgacctcacttctcttttaaaaaaacaggtagctacttctattgacatatgctttctattcatttcagGTTTCATATTTGCTCTGTGCTCTTGGAGATGGTCATCTGTTCAGTTTTCTGTTGAATGCAAGTACGGGTGAATTAACTGATAGAAAGAAGGTTTCTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG