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gtaaacagctggaacctactatagatacttacggctttcacatagtctgtctctatatatcccagtttcctcagtattggttccacgtgattacagGTAGAATTGCCAAGTAAATGACCTTGATAGAAGGTCGTTCCTGAAAATTGTGTGCTTGGTATCTGGTGGTAAGATATTCAGCTCAGGCCTCAATTCCATT
species | Oryza sativa |
transcript | LOC_Os05g50510.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CATGCCTGTATTTCTGCTCACTTATTCTTGTGAAAATTACTATTGTATAG GTAGAATTGCCAAGTAAATGACCTTGATAGAAGGTCGTTCCGGAAAATTGTEST: gi|11544393|gb|BF475211.1|BF475211
genomic: CATGCCTGTATTTCTGCTCACTTATTCTTGTGAAAATTACTATTGTATAGgtaaacagct ... gtgattacagGTAGAATTGCCAAGTAAATGACCTTGATAGAAGGTCGTTCCTGAAAATTGT
EST: CATGCCTGTATTTCTGCTCACTTATTCTTGTGAAAATTACTATTGTATAG GTAGAATTGCCAAGTAAATGACCTTGATAGAAGGTCGTTCCTGAAAATTGTEST: gi|117217788|gb|CT845133.1|CT845133
genomic: CATGCCTGTATTTCTGCTCACTTATTCTTGTGAAAATTACTATTGTATAGgtaaacagct ... gtgattacagGTAGAATTGCCAAGTAAATGACCTTGATAGAAGGTCGTTCCTGAAAATTGT
EST: CATGCCTGTATTTCTGCTCACTTATTCTTGTGAAAATTACTATTGTATAG GTAGAATTGCCAAGTAAATGACCTTGATAGAAGGTCGTTCCTGAAAATTGTEST: gi|88989981|gb|CI018844.1|CI018844
genomic: CATGCCTGTATTTCTGCTCACTTATTCTTGTGAAAATTACTATTGTATAGgtaaacagct ... gtgattacagGTAGAATTGCCAAGTAAATGACCTTGATAGAAGGTCGTTCCTGAAAATTGT
EST: CATGCCTGTATTTCTGCTCACTTATTCTTGTGAAAATTACTATTGTATAG GTAGAATTGCCAAGTAAATGACCTTGATAGAAGGTCGTTCCTGAAAATTGTEST: gi|27576336|gb|CA999030.1|CA999030
genomic: CATGCCTGTATTTCTGCTCACTTATTCTTGTGAAAATTACTATTGTATAGgtaaacagct ... gtgattacagGTAGAATTGCCAAGTAAATGACCTTGATAGAAGGTCGTTCCTGAAAATTGT
EST: CATGCCTGTATTTCTGCTCACTTATTCTTGTGAAAATTACTATTGTATAG GTAGAATTGCCAAGTAAATGACCTTGATAGAAGGTCGTTCCTGAAAATTGTEST: gi|86838777|gb|CI330232.1|CI330232
genomic: CATGCCTGTATTTCTGCTCACTTATTCTTGTGAAAATTACTATTGTATAGgtaaacagct ... gtgattacagGTAGAATTGCCAAGTAAATGACCTTGATAGAAGGTCGTTCCTGAAAATTGT
EST: CATGCCTGTATTTCTGCTCACTTATTCTTGTGAAAATTACTATTGTATAG GTAGAATTGCCAAGTAAATGACCTTGATAGAAGGTCGTTCCTGAAAATTGT
genomic: CATGCCTGTATTTCTGCTCACTTATTCTTGTGAAAATTACTATTGTATAGgtaaacagct ... gtgattacagGTAGAATTGCCAAGTAAATGACCTTGATAGAAGGTCGTTCCTGAAAATTGT
atagtctgtctctatatatcccagtttcctcagtattggttccacgtgattacagGTAGAATTGCCAAGTAAATGACCTTGATAGAAGGTCGTTCCTGAAAATTGTGTGCTTGGTATCTGGTGGTAAGATATTCAGCTCAGGCCTCAATTCCATT
tctatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacagctggaacctactatagatacttacggctttcacatagtctgtctctatatatcccagtttcctcagtattggttccacgtgattacagGTAGAATTGCCAAGTAAATGACCTTGATAGAAGGTCGTTCCTGAAAATTGTGTGCTTGGTATCTGGTGGTAAGATATTCAGCTCAGGCCTCAATTCCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA