1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtatagcttcatggctcataatcatacggccttggaatttagctgaagagcattcacatggccatgatttttggagcatttgtcagatggtctgaagactcacttccaacttgtatattttcagATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCCAACTGGCTTACATCCTTTGGAATAACAATGACAGCAAACTTGATGCTTA
species | Oryza sativa |
transcript | LOC_Os05g49270.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAG ATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCCEST: gi|88956974|gb|CI095026.1|CI095026
genomic: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAGgtatagcttc ... atattttcagATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCC
EST: CCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAG ATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCCEST: gi|58682760|gb|CK071447.1|CK071447
genomic: CCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAGgtatagcttc ... atattttcagATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCC
EST: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAG ATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCCEST: gi|88257732|gb|CI360318.1|CI360318
genomic: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAGgtatagcttc ... atattttcagATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCC
EST: TTCCATGGATCATAATGTCAGAG ATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCCEST: gi|86541299|gb|CI181505.1|CI181505
genomic: TTCCATGGATCATAATGTCAGAGgtatagcttc ... atattttcagATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCC
EST: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAG ATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCCEST: gi|86501749|gb|CI144382.1|CI144382
genomic: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAGgtatagcttc ... atattttcagATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCC
EST: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAG ATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCCEST: gi|87021810|gb|CI277977.1|CI277977
genomic: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAGgtatagcttc ... atattttcagATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCC
EST: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAG ATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCCEST: gi|86890215|gb|CI321392.1|CI321392
genomic: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAGgtatagcttc ... atattttcagATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCC
EST: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAG ATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCCEST: gi|88281786|gb|CI403182.1|CI403182
genomic: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAGgtatagcttc ... atattttcagATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCC
EST: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAG ATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCCEST: gi|29687040|gb|CB683315.1|CB683315
genomic: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAGgtatagcttc ... atattttcagATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCC
EST: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAG ATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCCEST: gi|88502203|gb|CI429709.1|CI429709
genomic: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAGgtatagcttc ... atattttcagATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCC
EST: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAG ATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCCEST: gi|86887575|gb|CI294209.1|CI294209
genomic: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAGgtatagcttc ... atattttcagATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCC
EST: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAG ATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCCEST: gi|88975788|gb|CI024039.1|CI024039
genomic: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAGgtatagcttc ... atattttcagATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCC
EST: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAG ATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCCEST: gi|86903200|gb|CI313563.1|CI313563
genomic: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAGgtatagcttc ... atattttcagATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCC
EST: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAG ATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCCEST: gi|86890239|gb|CI321416.1|CI321416
genomic: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAGgtatagcttc ... atattttcagATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCC
EST: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAG ATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCC
genomic: TCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAGgtatagcttc ... atattttcagATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCC
tttggagcatttgtcagatggtctgaagactcacttccaacttgtatattttcagATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCCAACTGGCTTACATCCTTTGGAATAACAATGACAGCAAACTTGATGCTTA
gactcac putative branch site (score: 8)
tattttc putative PPT
aacttgtatatttt TA-rich tract