1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtaattttctactgcagtgattaggaatgtttttgttcctggttactcacataatatcgtggcagGGAGGCATTGATGATGGCGGAGCTGCATCTGTGAGAGCAATTATGCATTGGCAATACCGGACTATCTGTAGAGGCCCTAATTCTATACTTCAGAATCTAT
species | Oryza sativa |
transcript | LOC_Os05g29050.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: NNNNGCGCTTCAAAGCCATCATAATAATACCTCTGTTACCTGGTTTTCAG GGAGGTATTGATGATGGCGGAGCTGCATCTGTGAGAGCAATTATGCATTGGEST: gi|33797063|gb|CF324398.1|CF324398
genomic: AAAAGCGCTTCAAAGCCATCATAATAATACCTCTGTTACCTGGTTTTCAGgtaattttct ... atcgtggcagGGAGGCATTGATGATGGCGGAGCTGCATCTGTGAGAGCAATTATGCATTGG
EST: GCGCTTCAAAGCCATCATAATAATACCTCTGTTACCTGGTTTTCAG GGAGGCATTGATGATGGCGGAGCTGCATCTGTGAGAGCAATTATGCATTGGEST: gi|33677625|gb|CF305864.1|CF305864
genomic: GCGCTTCAAAGCCATCATAATAATACCTCTGTTACCTGGTTTTCAGgtaattttct ... atcgtggcagGGAGGCATTGATGATGGCGGAGCTGCATCTGTGAGAGCAATTATGCATTGG
EST: NNNNGCGCTTCANAGCCATCATAATAATACCTCTGTTACCTGGTTTTCAG GGAGGCATTGATGATGGCGGAGCTGCATCTGTGAGAGCAATTATGCATTGG
genomic: AAAAGCGCTTCAAAGCCATCATAATAATACCTCTGTTACCTGGTTTTCAGgtaattttct ... atcgtggcagGGAGGCATTGATGATGGCGGAGCTGCATCTGTGAGAGCAATTATGCATTGG
actgcagtgattaggaatgtttttgttcctggttactcacataatatcgtggcagGGAGGCATTGATGATGGCGGAGCTGCATCTGTGAGAGCAATTATGCATTGGCAATACCGGACTATCTGTAGAGGCCCTAATTCTATACTTCAGAATCTAT
tactcac putative branch site (score: 3)
aatgttttt TA-rich tract