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...cgattagtgccattatacaatgattctgtgaatacctagtggttttgtaatccatagagtccttaacaattttggttttgctgccccttcctaattgcagTCTATTCTTGAAAATGTGAACCATGGGGCAAGGTTGGTTGAACTATCAAACGAAGACAACGTGAAACGCTTTACTTTTAACGAAGATCTTCAGGCACGCC
species | Oryza sativa |
transcript | LOC_Os05g27870.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CCATAATATTGAGTCTGAAGCAGAAGGCTGAGTCTCTTGATGAAGTGGAG TCTATTCTTGAAAATGTGAACCATGGGGCAAGGTTGGTTGAACTATCAAACEST: gi|427959|gb|D24104.1|D24104
genomic: CCATAATATTGAGTCTGAAGCAGAAGGCTGAGTCTCTTGATGAAGTGGAGgttagtcatg ... ctaattgcagTCTATTCTTGAAAATGTGAACCATGGGGCAAGGTTGGTTGAACTATCAAAC
EST: CCATAATATTGAGTCTGAAGCAGAAGGCTGAGTCTCTTGATGAAGTGGAG TCTATTCTTGAAAATGTGAACCATGGGGCAAGGTTGGTTGAACTATCAAACEST: gi|29677067|gb|CB673342.1|CB673342
genomic: CCATAATATTGAGTCTGAAGCAGAAGGCTGAGTCTCTTGATGAAGTGGAGgttagtcatg ... ctaattgcagTCTATTCTTGAAAATGTGAACCATGGGGCAAGGTTGGTTGAACTATCAAAC
EST: CCATAATATTGAGTCTGAAGCAGAAGGCTGAGTCTCTTGATGAAGTGGAG TCTATTCTTGAAAATGTGAACCATGGGGCAAGGTTGGTTGAACTATCAAAC
genomic: CCATAATATTGAGTCTGAAGCAGAAGGCTGAGTCTCTTGATGAAGTGGAGgttagtcatg ... ctaattgcagTCTATTCTTGAAAATGTGAACCATGGGGCAAGGTTGGTTGAACTATCAAAC
tgtaatccatagagtccttaacaattttggttttgctgccccttcctaattgcagTCTATTCTTGAAAATGTGAACCATGGGGCAAGGTTGGTTGAACTATCAAACGAAGACAACGTGAAACGCTTTACTTTTAACGAAGATCTTCAGGCACGCC
tcctaat putative branch site (score: 15)
ttttgctgccccttcc CT-rich tract
ttaacaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgattagtgccattatacaatgattctgtgaatacctagtggttttgtaatccatagagtccttaacaattttggttttgctgccccttcctaattgcagTCTATTCTTGAAAATGTGAACCATGGGGCAAGGTTGGTTGAACTATCAAACGAAGACAACGTGAAACGCTTTACTTTTAACGAAGATCTTCAGGCACGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - -tgccatt
- - - - - - - - - - -gattctg