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gtgaagatttcaacattccagcatctcttttcattgatgaagatatcaacattttcatggttttgctgcgctctagataacaaatgaagaatttaactctgttttcagacaataattcgtagcctactttgttgcagGAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAACGCAGCGTCGATCCTGTCTTCCAGGAGTTGTTATACTGATGCTGAGAAAC
species | Oryza sativa |
transcript | LOC_Os05g03820.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAG GAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAACEST: gi|86831376|gb|CI299434.1|CI299434
genomic: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAGgtgaagattt ... tttgttgcagGAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAAC
EST: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAG GAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAACEST: gi|88723315|gb|CI746825.1|CI746825
genomic: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAGgtgaagattt ... tttgttgcagGAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAAC
EST: GTACAAGGAGGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAG GAGTGACCCCAGCTGAGAGGCTGCEST: gi|11442624|gb|BF430527.1|BF430527
genomic: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAGgtgaagattt ... tttgttgcagGAGTGACCCCAGCTGAGAGGCTGC
EST: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAG GAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAACEST: gi|88244533|gb|CI243655.1|CI243655
genomic: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAGgtgaagattt ... tttgttgcagGAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAAC
EST: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAG GAGTGACCCCAGCTGAGAGGCTGCTCGATTTGTACGAGACGAAGTGGCAACEST: gi|29645922|gb|CB650929.1|CB650929
genomic: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAGgtgaagattt ... tttgttgcagGAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAAC
EST: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAG GAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAACEST: gi|58663354|gb|CK052040.1|CK052040
genomic: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAGgtgaagattt ... tttgttgcagGAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAAC
EST: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAG GAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAACEST: gi|2311714|gb|C27869.1|C27869
genomic: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAGgtgaagattt ... tttgttgcagGAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAAC
EST: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAG GAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGGGGCAACEST: gi|56157390|gb|D48012.2|D48012
genomic: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAGgtgaagattt ... tttgttgcagGAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAAC
EST: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAG GAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAACEST: gi|58695197|gb|CK083884.1|CK083884
genomic: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAGgtgaagattt ... tttgttgcagGAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAAC
EST: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAG GAGTGACCCCAGCTGAGAGGCEST: gi|88981214|gb|CI026944.1|CI026944
genomic: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAGgtgaagattt ... tttgttgcagGAGTGACCCCAGCTGAGAGGC
EST: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAG GAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAACEST: gi|66928215|gb|CX115063.1|CX115063
genomic: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAGgtgaagattt ... tttgttgcagGAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAAC
EST: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAG GAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAACEST: gi|89198318|gb|CI007378.1|CI007378
genomic: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAGgtgaagattt ... tttgttgcagGAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAAC
EST: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAG GAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAACEST: gi|86900529|gb|CI298364.1|CI298364
genomic: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAGgtgaagattt ... tttgttgcagGAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAAC
EST: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAG GAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAAC
genomic: GTACAAGGAAGTTGGTTTCTTAAGAGAGGTTGATGCAGTGATCAGTTCAGgtgaagattt ... tttgttgcagGAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAAC
aatgaagaatttaactctgttttcagacaataattcgtagcctactttgttgcagGAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAACGCAGCGTCGATCCTGTCTTCCAGGAGTTGTTATACTGATGCTGAGAAAC
atttaac putative branch site (score: 3)
cctacttt putative PPT
agaatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagatttcaacattccagcatctcttttcattgatgaagatatcaacattttcatggttttgctgcgctctagataacaaatgaagaatttaactctgttttcagacaataattcgtagcctactttgttgcagGAGTGACCCCAGCTGAGAGGCTGCTCAATTTGTACGAGACGAAGTGGCAACGCAGCGTCGATCCTGTCTTCCAGGAGTTGTTATACTGATGCTGAGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG