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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagtaagagctgctcaatccctgagcaatacttgctggcttgttggtaatgatttccatgttcactgatgataagtttgttgatctgcggcatgtaccagGGACGACTCCTTGAGGAAGCATATACAATTCCTGGAGCAACAAGGCATAGCGGGCGTGAGCCATCACAGCCTTCTGTTTTCTAAGACAGCAATCTTACCT

Basic information

species Oryza sativa
transcript LOC_Os04g59624.3
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g59624.3 (Oryza sativa), 3'ss of exon 15
lower sequence: GRMZM2G138125_T02 (Zea mays), 3'ss of exon 16
gagtaagagctgctcaatccctgagcaatacttgctggcttgttggtaatgatttccatgttcactgatgataagtttgttgatctgcg--gcatgtaccagGGACGACTCCTTGAGGAAGCATATACAATTCCTGGAGCAACAAGGCATAGCGGGCGTGAGCCATCACAGCCTTCTGTTTTCTAAGACAGCAATCTTACCT
 | ||  |     |  |  | ||  ||   ||||    |   | | |       |      | | | |    ||  | || | | ||    |||| |  |||||| || |||||||||||||||||||| || |||||||||||||| ||||| || ||||| ||||||||||| || || ||||| || |||| | | || 
caatagaattcaatagaaacatg--cacctcttgtctccagatggatttcctgctttgcactaattcagtgaaacctggtgggtttgttacgcatcttacagGGATGAGTCCTTGAGGAAGCATATACAGTTTCTGGAGCAACAAGGAATAGCCGGTGTGAGTCATCACAGCCTCCTATTCTCTAAAACTGCAACCCTGCCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|2800937|gb|AA754231.1|AA754231
EST:     TCGCTGACACAAAAGCAATTGCAAGAAGAGCATGGACAACAACTTGTGAT                         GGACGACTCCTTGAGGAAGCATATACAATTCCTGGAGCAACAAGGCATAGC
genomic: TCGCTGACACAAAAGCAATTGCAAGAAGAGCATGGACAACAACTTGTGATgtaggacatc ... catgtaccagGGACGACTCCTTGAGGAAGCATATACAATTCCTGGAGCAACAAGGCATAGC
EST: gi|58685729|gb|CK074416.1|CK074416
EST:     TCGCTGACACAAAAGCAATTGCAAGAAGAGCATGGACAACAACTTGTGAT                         GGACGACTCCTTGAGGAAGCATATACAATTCCTGGAGCAACAAGGCATAGC
genomic: TCGCTGACACAAAAGCAATTGCAAGAAGAGCATGGACAACAACTTGTGATgtaggacatc ... catgtaccagGGACGACTCCTTGAGGAAGCATATACAATTCCTGGAGCAACAAGGCATAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatgatttccatgttcactgatgataagtttgttgatctgcggcatgtaccagGGACGACTCCTTGAGGAAGCATATACAATTCCTGGAGCAACAAGGCATAGCGGGCGTGAGCCATCACAGCCTTCTGTTTTCTAAGACAGCAATCTTACCT
                         ataagttt  TA-rich tract