1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaagactttatatcattttgggcatgacaataagtatgatttgttcatatcaactaatttcattgctattcagGTGTTAGGGGATATCACACCATCGTTGTCTATAGAAGAATTACAAAACTATGAACAGTTGAGGAAGAAGATTGAGGGACCATCTAGATGACGTCAGTTAA
species | Oryza sativa |
transcript | LOC_Os04g52690.3 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GTGAAGCCAGTGCTGATGACGTCATTGTTGAGATAAATGATTTCATGACA GTGTTAGGGGATATCACACCATCGTTGTCTATAGAAGAATTACAAAACTATEST: gi|87020793|gb|CI269510.1|CI269510
genomic: GTGAAGCCAGTGCTGATGACGTCATTGTTGAGATAAATGATTTCATGACAgtaagacttt ... tgctattcagGTGTTAGGGGATATCACACCATCGTTGTCTATAGAAGAATTACAAAACTAT
EST: GTGAAGCCAGTGCTGATGACGTCATTGTT-TGATAAATGATTTCATGACA GTGTTAGGGGATATCACACCATCGTTGTCTATAGAAGAATTACAAAACTATEST: gi|29626783|gb|CB631794.1|CB631794
genomic: GTGAAGCCAGTGCTGATGACGTCATTGTTGAGATAAATGATTTCATGACAgtaagacttt ... tgctattcagGTGTTAGGGGATATCACACCATCGTTGTCTATAGAAGAATTACAAAACTAT
EST: GTGAAGCCAGTGCTGATGACGTCATTGTTGAGATAAATGATTTCATGACA GTGTTAGGGGATATCGCACCATCGTTGTCTATAGAAGAATTACAAAACTATEST: gi|29667676|gb|CB663951.1|CB663951
genomic: GTGAAGCCAGTGCTGATGACGTCATTGTTGAGATAAATGATTTCATGACAgtaagacttt ... tgctattcagGTGTTAGGGGATATCACACCATCGTTGTCTATAGAAGAATTACAAAACTAT
EST: GTGAAGCCAGTGCTGATGACGTCATTGTTGAGATAAATGATTTCATGACA GTGTTAGGGGATATCACACCATCGTTGTCTATAGAAGAATTACAAAACTAT
genomic: GTGAAGCCAGTGCTGATGACGTCATTGTTGAGATAAATGATTTCATGACAgtaagacttt ... tgctattcagGTGTTAGGGGATATCACACCATCGTTGTCTATAGAAGAATTACAAAACTAT
tgggcatgacaataagtatgatttgttcatatcaactaatttcattgctattcagGTGTTAGGGGATATCACACCATCGTTGTCTATAGAAGAATTACAAAACTATGAACAGTTGAGGAAGAAGATTGAGGGACCATCTAGATGACGTCAGTTAA
aactaat putative branch site (score: 2)
tttcatt CT-rich tract
aataagtatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagactttatatcattttgggcatgacaataagtatgatttgttcatatcaactaatttcattgctattcagGTGTTAGGGGATATCACACCATCGTTGTCTATAGAAGAATTACAAAACTATGAACAGTTGAGGAAGAAGATTGAGGGACCATCTAGATGACGTCAGTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG