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gtgaggaaatgcatattcaattgcttcttgtaaaggtagtatgaagatcaatgtttatgctgttctaccttgcagTGATGAGTCACTATTGCATGAAGACAATTCACTGTCAGCTGATTTAAGCAGCAGTCTTCACCTCGGGGATTCAGCTAATCCAACAAGTGGATCCGCCAGA
species | Oryza sativa |
transcript | LOC_Os04g51370.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TCATCAGCGGCATCCACACTTGACAATGCTTATTGGGACC-TTATTTTAG TGATGAGTCACTATTGCATGAAGACAATTCACTGTCAGCTGATTTAAGCAGEST: gi|87023697|gb|CI286448.1|CI286448
genomic: TCATCAGCGGCATCCACACTTGACAATGCTTATTGGGACCCTTATTTTAGgtgaggaaat ... taccttgcagTGATGAGTCACTATTGCATGAAGACAATTCACTGTCAGCTGATTTAAGCAG
EST: TCATCAGCGGCATCCACACTTGACAATGCTTATTGGGACCCTTATTTTAG TGATGAGTCACTATTGCATGAAGACAATTCACTGTCA
genomic: TCATCAGCGGCATCCACACTTGACAATGCTTATTGGGACCCTTATTTTAGgtgaggaaat ... taccttgcagTGATGAGTCACTATTGCATGAAGACAATTCACTGTCA
ttgcttcttgtaaaggtagtatgaagatcaatgtttatgctgttctaccttgcagTGATGAGTCACTATTGCATGAAGACAATTCACTGTCAGCTGATTTAAGCAGCAGTCTTCACCTCGGGGATTCAGCTAATCCAACAAGTGGATCCGCCAGA
ttctacctt CT-rich tract
aatgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggaaatgcatattcaattgcttcttgtaaaggtagtatgaagatcaatgtttatgctgttctaccttgcagTGATGAGTCACTATTGCATGAAGACAATTCACTGTCAGCTGATTTAAGCAGCAGTCTTCACCTCGGGGATTCAGCTAATCCAACAAGTGGATCCGCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA