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gtaagcgtccctgaactcaaccactgtgttggacacaatttttttttctactgctagttttctgtaactatgttatgcatcaccttcatccatgtgccttgtagaaggctagacactgctcacatccgctgacgagtacttctatgtcatcagAGAACATTAGAAGGCAAGGAAGCATAGCTGCATACATGGCATGCTTTCACGATCTTCAGAGCTTGGTGGCATCAGAGCTTTGCTCCCTGCTCAAAAACGT
species | Oryza sativa |
transcript | LOC_Os03g61950.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TGCTTTCCACCTGAGGCTGGGATAGCATCTTAGTTCTGACTCTTTACTTG AGAACATTAGAAGGCAAGGAAGCATAGCTGCATACATGGCATGCTTTCACGEST: gi|88546559|gb|CI476210.1|CI476210
genomic: TGCTTTCCACCTGAGGCTGGGATAGCATCTTAGTTCTGACTCTTTACTTGgtaagcgtcc ... atgtcatcagAGAACATTAGAAGGCAAGGAAGCATAGCTGCATACATGGCATGCTTTCACG
EST: GCTTTCCACCTGAGGCTGGGATAGCATCTTAGTTCTGACTCTTTACTTG AGAACATTAGAAGGCAAGGAAGCATAGCTGCATACATGGCATGCTTTCACGEST: gi|86599110|gb|CI355727.1|CI355727
genomic: GCTTTCCACCTGAGGCTGGGATAGCATCTTAGTTCTGACTCTTTACTTGgtaagcgtcc ... atgtcatcagAGAACATTAGAAGGCAAGGAAGCATAGCTGCATACATGGCATGCTTTCACG
EST: TGCTTTCCACCTGAGGCTGGGATAGCATCTTAGTTCTGACTCTTTACTTG AGAACATTAGAAGGCAAGGAAGCATAGCTGCATACATGGCATGCTTTCACGEST: gi|44668058|gb|CR281492.1|CR281492
genomic: TGCTTTCCACCTGAGGCTGGGATAGCATCTTAGTTCTGACTCTTTACTTGgtaagcgtcc ... atgtcatcagAGAACATTAGAAGGCAAGGAAGCATAGCTGCATACATGGCATGCTTTCACG
EST: CCTGAGGCTGGGATAGCATCTTAGTTCTGACTCTTTACTTG AGAACATTAGAAGGCAAGGAAGCATAGCTGCATACATGGCATGCTTTCACGEST: gi|86503558|gb|CI146191.1|CI146191
genomic: CCTGAGGCTGGGATAGCATCTTAGTTCTGACTCTTTACTTGgtaagcgtcc ... atgtcatcagAGAACATTAGAAGGCAAGGAAGCATAGCTGCATACATGGCATGCTTTCACG
EST: TGCTTTCCACCTGAGGCTGGGATAGCATCTTAGTTCTGACTCTTTACTTG AGAACATTAGAAGGCAAGGAAGCATAGCTGCATACATGGCATGCTTTCACGEST: gi|88547608|gb|CI477916.1|CI477916
genomic: TGCTTTCCACCTGAGGCTGGGATAGCATCTTAGTTCTGACTCTTTACTTGgtaagcgtcc ... atgtcatcagAGAACATTAGAAGGCAAGGAAGCATAGCTGCATACATGGCATGCTTTCACG
EST: CACCTGAGGCTGGGATAGCATCTTAGTTCTGACTCTTTACTTG AGAACATTAGAAGGCAAGGAAGCATANCTGCATACATGGCATGCTTTCACGEST: gi|86437317|gb|CI119039.1|CI119039
genomic: CACCTGAGGCTGGGATAGCATCTTAGTTCTGACTCTTTACTTGgtaagcgtcc ... atgtcatcagAGAACATTAGAAGGCAAGGAAGCATAGCTGCATACATGGCATGCTTTCACG
EST: TGCTTTCCACCTGAGGCTGGGATAGCATCTTAGTTCTGACTCTTTACTTG AGAACATTAGAAGGCAAGGATGCATAGCTGCATACATGGCATGCTTTCACGEST: gi|88262375|gb|CI366149.1|CI366149
genomic: TGCTTTCCACCTGAGGCTGGGATAGCATCTTAGTTCTGACTCTTTACTTGgtaagcgtcc ... atgtcatcagAGAACATTAGAAGGCAAGGAAGCATAGCTGCATACATGGCATGCTTTCACG
EST: TTAGTTCTGACTCTTTACTTG AGAACATTAGAAGGCAAGGAAGCATAGCTGCATACATGGCATGCTTTCACGEST: gi|88259975|gb|CI363185.1|CI363185
genomic: TTAGTTCTGACTCTTTACTTGgtaagcgtcc ... atgtcatcagAGAACATTAGAAGGCAAGGAAGCATAGCTGCATACATGGCATGCTTTCACG
EST: GTTCTGACTCTTTACTTG AGAACATTAGAAGGCAAGGAAGCATAGCTGCATACATGGCATGCTTTCACG
genomic: GTTCTGACTCTTTACTTGgtaagcgtcc ... atgtcatcagAGAACATTAGAAGGCAAGGAAGCATAGCTGCATACATGGCATGCTTTCACG
ttgtagaaggctagacactgctcacatccgctgacgagtacttctatgtcatcagAGAACATTAGAAGGCAAGGAAGCATAGCTGCATACATGGCATGCTTTCACGATCTTCAGAGCTTGGTGGCATCAGAGCTTTGCTCCCTGCTCAAAAACGT
cttctat CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgtccctgaactcaaccactgtgttggacacaatttttttttctactgctagttttctgtaactatgttatgcatcaccttcatccatgtgccttgtagaaggctagacactgctcacatccgctgacgagtacttctatgtcatcagAGAACATTAGAAGGCAAGGAAGCATAGCTGCATACATGGCATGCTTTCACGATCTTCAGAGCTTGGTGGCATCAGAGCTTTGCTCCCTGCTCAAAAACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT