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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcctttttttttggcaattgaatttttactgcaattaatatactaactgcactgttcttagttgatttgcctagtaggtcatacttacttgagtagatgtgtatctgatgtatttctgtttatttttgttttctcccaaaacccagAGATATGCATTAGTTTTTGGGCTGAGGTGCACTACGATTCGGTATATGCAGAAAAAG

Basic information

species Oryza sativa
transcript LOC_Os03g39230.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g39230.1 (Oryza sativa), 3'ss of exon 15
lower sequence: GRMZM2G035150_T02 (Zea mays), 3'ss of exon 9
gtagcctttttttttggcaattgaatttttactgcaattaatatactaactgcactgt-----tcttagt-tgatttgcctagtaggtcatacttact-tgagtagat-----gtgtatct---gatg--tatttctgtttattttt----gtttt--ctcccaaaacccagAG----------------ATATGCATTAGTTTTTGGGCTGAGGTGCACTACGATTCGGTATATGCAGAAAAAG
|||   ||| ||||    |||| |||| |||  | | ||  | |||   |       |     ||| ||| |  ||||||||      | | || ||| ||  || ||     |  ||| |    |||  | ||| |||| ||        |||||  ||  | |||| ||||                 |||||| | |||||||||||||||||||||||| | ||  ||||| | |||  ||
gtaatgtttattttc--taatttaattgttatcg-agttgttgtacctgccctcacatcaaaatctgagtattgtttgcctaagtaaaccttctcactctgtatatatctcgggcatatttcccaatgggtgtttttgttgatgagcagaggttttggctatctaaactcagaagtcctgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtagatgtgtatctgatgtatttctgtttatttttgttttctcccaaaacccagAGATATGCATTAGTTTTTGGGCTGAGGTGCACTACGATTCGGTATATGCAGAAAAAG
           atctgat  putative branch site (score: 4)
                   tatttctgtttatttt  CT-rich tract
                   tatttctgtttatttt  TA-rich tract