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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtacatggctgttatcattaacatatctcgaatttgcctcaatattttttattgaaggagagagtttacctcaattttattcataacttttgttttctaaaaatgccactgtgttaattgcagTTTATGGTTAAGAAGGGCATTGTGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACTGTAAGTCTAATCAGGTTCCAGTTGGAAA

Basic information

species Oryza sativa
transcript LOC_Os03g24460.3
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g24460.3 (Oryza sativa), 3'ss of exon 15
lower sequence: GRMZM2G108416_T01 (Zea mays), 3'ss of exon 15
gtaagtgtacatggctgttatcattaacatatctcgaatttgcctcaatattttttattgaaggagagagtttacctcaattttattcataacttttgttttctaaaaatgccactgtgttaattgcagTTTATGGTTAAGAAGGGCATTGTGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACTGTAAGTCTAATCAGGTTCCAGTTGGAAA
                                      |  || |  |||  ||| ||  ||      |||  ||    | || || ||| |||  | |   ||  |  ||   |  ||| || ||||||||||||| || ||||| ||||| ||||||||||||||||| || |||||||||||||||||||| ||||||                            
-------------------------------------gtaagcatacataccttt-atcaaaacgactagtagac----acttgatacatgactgctctaaactgcat-tgtgtcaatgtcaactgcagTTTATGGTCAAAAAGGGAATTGTATTGACACCTCATGCTGACTATTGCCTTCCAGGCATTACGCGAGCAACT----------------------------

upper sequence: LOC_Os03g24460.3 (Oryza sativa), 3'ss of exon 15
lower sequence: GLYMA19G42530.1 (Glycine max), 3'ss of exon 15
gtaagtgtacatggctgttatcattaacatatctcgaatttgcctcaatattt-tttattgaaggagagagtttacctcaattttattcataacttttgttttctaaaaatgccactgtgttaattgcagTTTATGGTTAAGAAGGGCATTGTGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACTGTAAGTCTAATCAGGTTCCAGTTGGAAA
                   |||     |   |||    |||||  |||  ||   ||| |   | | ||| | ||     |||| |   || |||||   |   |     |    || |  |   |||||||| | ||||| || |||  ||| ||||| ||||||||||| ||||| ||||| |||||||| |||||||||                            
-----------------ggatctcaggctattctt---tttgcaacaaggttcacttagtatggtacagaatataat--gatttga---attactttaactcatt-----tattgctcttctttctgcagTTTGTTGTTAAAAAAGGCCGTGTTTTGACCCCTCATGCTGATTACTGTCTTCCTGGCATTACTCGTGCAACT----------------------------

upper sequence: LOC_Os03g24460.3 (Oryza sativa), 3'ss of exon 15
lower sequence: GLYMA03G40000.1 (Glycine max), 3'ss of exon 15
gtaagtgtacatggctgttatcattaacatatctcgaatttgcctcaatattttttattgaaggagagagtttacctcaattttattcataacttttgttttctaaaaatgccactgtgttaattgcagTTTATGGTTAAGAAGGGCATTGTGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACTGTAAGTCTAATCAGGTTCCAGTTGGAAA
                    ||| ||   | |    ||   |  ||| | |     || ||| |  | ||  ||     |||| |   || ||||    ||  |     |    |  |  |   |||||||| | ||||| ||||||  ||| ||||| ||||||||||| ||||| ||||| |||||||| |||||||||                            
--------------------tcactattcttttggcaacaaggttcact-tgcagcatagaatggtacagaatagaatgatttga---attacttaaacttatt-----tattgcccttctttctgcagTTTGTTGTTAAAAAGGGCCGTGTTTTGACCCCTCATGCTGATTACTGTCTTCCTGGCATTACTCGTGCAACT----------------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctcaattttattcataacttttgttttctaaaaatgccactgtgttaattgcagTTTATGGTTAAGAAGGGCATTGTGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACTGTAAGTCTAATCAGGTTCCAGTTGGAAA
     attttattcataactt  TA-rich tract