1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...ttgctgatattgctactgtacgccgctgctgttcatttgttgaatatgcataccatagattaattgattgtaattttgctttgcaaataaaaacttccagGCTTGCTATTCAAAGGCTCGAAATAGCAAAGAATGATCTGCAGAACAGAATTGCCAAAGAG
species | Oryza sativa |
transcript | LOC_Os03g24180.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GCAAGAAAGAGTCAACACTCTGAATCAGTCGACTCATCTGGTGAAGAAGA GCTTGCTATTCAAAGGCTCGAAATAGCAAAGAATGATCTGCAGAACAGAATEST: gi|58683426|gb|CK072113.1|CK072113
genomic: GCAAGAAAGAGTCAACACTCTGAATCAGTCGACTCATCTGGTGAAGAAGAgtaagccctt ... aaacttccagGCTTGCTATTCAAAGGCTCGAAATAGCAAAGAATGATCTGCAGAACAGAAT
EST: GCAAGAAAGAGTCAACACTCTGAATCAGTCGACTCATCTGGTGAAGAAGA GCTTGCTATTCAAAGGCTCGAAATAGCAAAGAATGATCTGCAGAACAGAAT
genomic: GCAAGAAAGAGTCAACACTCTGAATCAGTCGACTCATCTGGTGAAGAAGAgtaagccctt ... aaacttccagGCTTGCTATTCAAAGGCTCGAAATAGCAAAGAATGATCTGCAGAACAGAAT
atgcataccatagattaattgattgtaattttgctttgcaaataaaaacttccagGCTTGCTATTCAAAGGCTCGAAATAGCAAAGAATGATCTGCAGAACAGAATTGCCAAAGAG
cttcc CT-rich tract
atagattaattgattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctgatattgctactgtacgccgctgctgttcatttgttgaatatgcataccatagattaattgattgtaattttgctttgcaaataaaaacttccagGCTTGCTATTCAAAGGCTCGAAATAGCAAAGAATGATCTGCAGAACAGAATTGCCAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
-tgctgat
- - - - - tgctact
- - - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - tgcatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgattgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaataa